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Large-scale functional organization of long-range chromatin interaction networks.
Sandhu KS, Li G, Poh HM, Quek YL, Sia YY, Peh SQ, Mulawadi FH, Lim J, Sikic M, Menghi F, Thalamuthu A, Sung WK, Ruan X, Fullwood MJ, Liu E, Csermely P, Ruan Y. Sandhu KS, et al. Among authors: sikic m. Cell Rep. 2012 Nov 29;2(5):1207-19. doi: 10.1016/j.celrep.2012.09.022. Epub 2012 Oct 25. Cell Rep. 2012. PMID: 23103170 Free PMC article.
SW#-GPU-enabled exact alignments on genome scale.
Korpar M, Šikic M. Korpar M, et al. Among authors: sikic m. Bioinformatics. 2013 Oct 1;29(19):2494-5. doi: 10.1093/bioinformatics/btt410. Epub 2013 Jul 17. Bioinformatics. 2013. PMID: 23864730 Free PMC article.
SIFT missense predictions for genomes.
Vaser R, Adusumalli S, Leng SN, Sikic M, Ng PC. Vaser R, et al. Among authors: sikic m. Nat Protoc. 2016 Jan;11(1):1-9. doi: 10.1038/nprot.2015.123. Epub 2015 Dec 3. Nat Protoc. 2016. PMID: 26633127
SW#db: GPU-Accelerated Exact Sequence Similarity Database Search.
Korpar M, Šošić M, Blažeka D, Šikić M. Korpar M, et al. Among authors: sikic m. PLoS One. 2015 Dec 31;10(12):e0145857. doi: 10.1371/journal.pone.0145857. eCollection 2015. PLoS One. 2015. PMID: 26719890 Free PMC article.
SWORD-a highly efficient protein database search.
Vaser R, Pavlović D, Šikić M. Vaser R, et al. Among authors: sikic m. Bioinformatics. 2016 Sep 1;32(17):i680-i684. doi: 10.1093/bioinformatics/btw445. Bioinformatics. 2016. PMID: 27587689
36 results