Simmons MP - Search Results

1

Rapid intraspecific evolution of miRNA and siRNA genes in the mosquito Aedes aegypti.

Bernhardt SA, Simmons MP, Olson KE, Beaty BJ, Blair CD, Black WC. Bernhardt SA, et al. Among authors: simmons mp. PLoS One. 2012;7(9):e44198. doi: 10.1371/journal.pone.0044198. Epub 2012 Sep 21. PLoS One. 2012. PMID: 23028502 Free PMC article.

2

Relative character-state space, amount of potential phylogenetic information, and heterogeneity of nucleotide and amino acid characters.

Simmons MP, Carr TG, O'Neill K. Simmons MP, et al. Mol Phylogenet Evol. 2004 Sep;32(3):913-26. doi: 10.1016/j.ympev.2004.04.011. Mol Phylogenet Evol. 2004. PMID: 15288066

3

A penalty of using anonymous dominant markers (AFLPs, ISSRs, and RAPDs) for phylogenetic inference.

Simmons MP, Zhang LB, Webb CT, Müller K. Simmons MP, et al. Mol Phylogenet Evol. 2007 Feb;42(2):528-42. doi: 10.1016/j.ympev.2006.08.008. Epub 2006 Aug 22. Mol Phylogenet Evol. 2007. PMID: 16997581

4

Potential use of host-derived genome signatures to root virus phylogenies.

Simmons MP. Simmons MP. Mol Phylogenet Evol. 2008 Dec;49(3):969-78. doi: 10.1016/j.ympev.2008.08.014. Epub 2008 Aug 29. Mol Phylogenet Evol. 2008. PMID: 18793737

5

Evolution of selenium hyperaccumulation in Stanleya (Brassicaceae) as inferred from phylogeny, physiology and X-ray microprobe analysis.

Cappa JJ, Yetter C, Fakra S, Cappa PJ, DeTar R, Landes C, Pilon-Smits EA, Simmons MP. Cappa JJ, et al. Among authors: simmons mp. New Phytol. 2015 Jan;205(2):583-95. doi: 10.1111/nph.13071. Epub 2014 Sep 29. New Phytol. 2015. PMID: 25262627 Free article.

6

The Complete Plastid Genome of Lagerstroemia fauriei and Loss of rpl2 Intron from Lagerstroemia (Lythraceae).

Gu C, Tembrock LR, Johnson NG, Simmons MP, Wu Z. Gu C, et al. Among authors: simmons mp. PLoS One. 2016 Mar 7;11(3):e0150752. doi: 10.1371/journal.pone.0150752. eCollection 2016. PLoS One. 2016. PMID: 26950701 Free PMC article.

7

Biases of tree-independent-character-subsampling methods.

Simmons MP, Gatesy J. Simmons MP, et al. Mol Phylogenet Evol. 2016 Jul;100:424-443. doi: 10.1016/j.ympev.2016.04.022. Epub 2016 Apr 19. Mol Phylogenet Evol. 2016. PMID: 27103257

8

Origin and evolution of Kinesin-like calmodulin-binding protein.

Abdel-Ghany SE, Day IS, Simmons MP, Kugrens P, Reddy AS. Abdel-Ghany SE, et al. Among authors: simmons mp. Plant Physiol. 2005 Jul;138(3):1711-22. doi: 10.1104/pp.105.060913. Epub 2005 Jun 10. Plant Physiol. 2005. PMID: 15951483 Free PMC article.

9

Comprehensive comparative analysis of kinesins in photosynthetic eukaryotes.

Richardson DN, Simmons MP, Reddy AS. Richardson DN, et al. Among authors: simmons mp. BMC Genomics. 2006 Jan 31;7:18. doi: 10.1186/1471-2164-7-18. BMC Genomics. 2006. PMID: 16448571 Free PMC article.

10

How can third codon positions outperform first and second codon positions in phylogenetic inference? An empirical example from the seed plants.

Simmons MP, Zhang LB, Webb CT, Reeves A. Simmons MP, et al. Syst Biol. 2006 Apr;55(2):245-58. doi: 10.1080/10635150500481473. Syst Biol. 2006. PMID: 16551581

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