Zhang Y - Search Results

1

GFOLD: a generalized fold change for ranking differentially expressed genes from RNA-seq data.

Feng J, Meyer CA, Wang Q, Liu JS, Shirley Liu X, Zhang Y. Feng J, et al. Among authors: zhang y. Bioinformatics. 2012 Nov 1;28(21):2782-8. doi: 10.1093/bioinformatics/bts515. Epub 2012 Aug 24. Bioinformatics. 2012. PMID: 22923299

2

Conservation analysis of small RNA genes in Escherichia coli.

Zhang Y, Zhang Z, Ling L, Shi B, Chen R. Zhang Y, et al. Among authors: zhang z. Bioinformatics. 2004 Mar 22;20(5):599-603. doi: 10.1093/bioinformatics/btg457. Epub 2004 Jan 22. Bioinformatics. 2004. PMID: 15033865

3

Model-based analysis of ChIP-Seq (MACS).

Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS, Bernstein BE, Nusbaum C, Myers RM, Brown M, Li W, Liu XS. Zhang Y, et al. Genome Biol. 2008;9(9):R137. doi: 10.1186/gb-2008-9-9-r137. Epub 2008 Sep 17. Genome Biol. 2008. PMID: 18798982 Free PMC article.

4

Systematic identification and evolutionary features of rhesus monkey small nucleolar RNAs.

Zhang Y, Liu J, Jia C, Li T, Wu R, Wang J, Chen Y, Zou X, Chen R, Wang XJ, Zhu D. Zhang Y, et al. BMC Genomics. 2010 Jan 25;11:61. doi: 10.1186/1471-2164-11-61. BMC Genomics. 2010. PMID: 20100322 Free PMC article.

5

Nucleosome dynamics define transcriptional enhancers.

He HH, Meyer CA, Shin H, Bailey ST, Wei G, Wang Q, Zhang Y, Xu K, Ni M, Lupien M, Mieczkowski P, Lieb JD, Zhao K, Brown M, Liu XS. He HH, et al. Among authors: zhang y. Nat Genet. 2010 Apr;42(4):343-7. doi: 10.1038/ng.545. Epub 2010 Mar 7. Nat Genet. 2010. PMID: 20208536 Free PMC article.

6

A transcriptional signature and common gene networks link cancer with lipid metabolism and diverse human diseases.

Hirsch HA, Iliopoulos D, Joshi A, Zhang Y, Jaeger SA, Bulyk M, Tsichlis PN, Shirley Liu X, Struhl K. Hirsch HA, et al. Among authors: zhang y. Cancer Cell. 2010 Apr 13;17(4):348-61. doi: 10.1016/j.ccr.2010.01.022. Cancer Cell. 2010. PMID: 20385360 Free PMC article.

7

Detrimental effects of antibiotics on mouse embryos in chromatin integrity, apoptosis and expression of zygotically activated genes.

Liu J, Tang S, Xu W, Wang Y, Yin B, Zhang Y. Liu J, et al. Among authors: zhang y. Zygote. 2011 May;19(2):137-45. doi: 10.1017/S0967199410000249. Epub 2010 Jun 30. Zygote. 2011. PMID: 20587135

8

Expression profiles of gonadotropins and their receptors during 17α-methyltestosterone implantation-induced sex change in the orange-spotted grouper (Epinephelus coioides).

Hu X, Liu X, Zhang H, Zhang Y, Li S, Sang Q, Wang Q, Luo W, Liu Q, Lu D, Meng Z, Lin H. Hu X, et al. Among authors: zhang h, zhang y. Mol Reprod Dev. 2011 Jun;78(6):376-90. doi: 10.1002/mrd.21319. Epub 2011 May 12. Mol Reprod Dev. 2011. PMID: 21567650

9

Using MACS to identify peaks from ChIP-Seq data.

Feng J, Liu T, Zhang Y. Feng J, et al. Among authors: zhang y. Curr Protoc Bioinformatics. 2011 Jun;Chapter 2:2.14.1-2.14.14. doi: 10.1002/0471250953.bi0214s34. Curr Protoc Bioinformatics. 2011. PMID: 21633945 Free PMC article.

10

Ultrathin and large-area macroporous polymeric membranes formed through self-assembly of sub-10 nm elastic nanoparticles.

Zhang Y, Wang Q. Zhang Y, et al. Macromol Rapid Commun. 2011 Oct 18;32(20):1645-51. doi: 10.1002/marc.201100389. Epub 2011 Aug 12. Macromol Rapid Commun. 2011. PMID: 21842507

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