Oxley D - Search Results

1

Genome-wide distribution of 5-formylcytosine in embryonic stem cells is associated with transcription and depends on thymine DNA glycosylase.

Raiber EA, Beraldi D, Ficz G, Burgess HE, Branco MR, Murat P, Oxley D, Booth MJ, Reik W, Balasubramanian S. Raiber EA, et al. Among authors: oxley d. Genome Biol. 2012 Aug 17;13(8):R69. doi: 10.1186/gb-2012-13-8-r69. Genome Biol. 2012. PMID: 22902005 Free PMC article.

2

A screen for hydroxymethylcytosine and formylcytosine binding proteins suggests functions in transcription and chromatin regulation.

Iurlaro M, Ficz G, Oxley D, Raiber EA, Bachman M, Booth MJ, Andrews S, Balasubramanian S, Reik W. Iurlaro M, et al. Among authors: oxley d. Genome Biol. 2013;14(10):R119. doi: 10.1186/gb-2013-14-10-r119. Genome Biol. 2013. PMID: 24156278 Free PMC article.

3

Quantitative sequencing of 5-methylcytosine and 5-hydroxymethylcytosine at single-base resolution.

Booth MJ, Branco MR, Ficz G, Oxley D, Krueger F, Reik W, Balasubramanian S. Booth MJ, et al. Among authors: oxley d. Science. 2012 May 18;336(6083):934-7. doi: 10.1126/science.1220671. Epub 2012 Apr 26. Science. 2012. PMID: 22539555

4

FGF signaling inhibition in ESCs drives rapid genome-wide demethylation to the epigenetic ground state of pluripotency.

Ficz G, Hore TA, Santos F, Lee HJ, Dean W, Arand J, Krueger F, Oxley D, Paul YL, Walter J, Cook SJ, Andrews S, Branco MR, Reik W. Ficz G, et al. Among authors: oxley d. Cell Stem Cell. 2013 Sep 5;13(3):351-9. doi: 10.1016/j.stem.2013.06.004. Epub 2013 Jul 11. Cell Stem Cell. 2013. PMID: 23850245 Free PMC article.

5

Comparison of whole-genome bisulfite sequencing library preparation strategies identifies sources of biases affecting DNA methylation data.

Olova N, Krueger F, Andrews S, Oxley D, Berrens RV, Branco MR, Reik W. Olova N, et al. Among authors: oxley d. Genome Biol. 2018 Mar 15;19(1):33. doi: 10.1186/s13059-018-1408-2. Genome Biol. 2018. PMID: 29544553 Free PMC article.

6

Retinol and ascorbate drive erasure of epigenetic memory and enhance reprogramming to naïve pluripotency by complementary mechanisms.

Hore TA, von Meyenn F, Ravichandran M, Bachman M, Ficz G, Oxley D, Santos F, Balasubramanian S, Jurkowski TP, Reik W. Hore TA, et al. Among authors: oxley d. Proc Natl Acad Sci U S A. 2016 Oct 25;113(43):12202-12207. doi: 10.1073/pnas.1608679113. Epub 2016 Oct 11. Proc Natl Acad Sci U S A. 2016. PMID: 27729528 Free PMC article.

7

Correction to: Comparison of whole-genome bisulfite sequencing library preparation strategies identifies sources of biases affecting DNA methylation data.

Olova N, Krueger F, Andrews S, Oxley D, Berrens RV, Branco MR, Reik W. Olova N, et al. Among authors: oxley d. Genome Biol. 2019 Feb 22;20(1):43. doi: 10.1186/s13059-019-1656-9. Genome Biol. 2019. PMID: 30795792 Free PMC article.

8

Regulation of lineage specific DNA hypomethylation in mouse trophectoderm.

Oda M, Oxley D, Dean W, Reik W. Oda M, et al. Among authors: oxley d. PLoS One. 2013 Jun 25;8(6):e68846. doi: 10.1371/journal.pone.0068846. Print 2013. PLoS One. 2013. PMID: 23825703 Free PMC article.

9

Transition to naïve human pluripotency mirrors pan-cancer DNA hypermethylation.

Patani H, Rushton MD, Higham J, Teijeiro SA, Oxley D, Cutillas P, Sproul D, Ficz G. Patani H, et al. Among authors: oxley d. Nat Commun. 2020 Jul 22;11(1):3671. doi: 10.1038/s41467-020-17269-3. Nat Commun. 2020. PMID: 32699299 Free PMC article.

10

Resetting transcription factor control circuitry toward ground-state pluripotency in human.

Takashima Y, Guo G, Loos R, Nichols J, Ficz G, Krueger F, Oxley D, Santos F, Clarke J, Mansfield W, Reik W, Bertone P, Smith A. Takashima Y, et al. Among authors: oxley d. Cell. 2014 Sep 11;158(6):1254-1269. doi: 10.1016/j.cell.2014.08.029. Cell. 2014. PMID: 25215486 Free PMC article.

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