Yildirim N - Search Results

1

Combined computational and experimental analysis reveals mitogen-activated protein kinase-mediated feedback phosphorylation as a mechanism for signaling specificity.

Hao N, Yildirim N, Nagiec MJ, Parnell SC, Errede B, Dohlman HG, Elston TC. Hao N, et al. Among authors: yildirim n. Mol Biol Cell. 2012 Oct;23(19):3899-910. doi: 10.1091/mbc.E12-04-0333. Epub 2012 Aug 8. Mol Biol Cell. 2012. PMID: 22875986 Free PMC article.

2

Regulators of G protein signaling and transient activation of signaling: experimental and computational analysis reveals negative and positive feedback controls on G protein activity.

Hao N, Yildirim N, Wang Y, Elston TC, Dohlman HG. Hao N, et al. Among authors: yildirim n. J Biol Chem. 2003 Nov 21;278(47):46506-15. doi: 10.1074/jbc.M308432200. Epub 2003 Sep 10. J Biol Chem. 2003. PMID: 12968019 Free article.

3

Mathematical modeling of RGS and G-protein regulation in yeast.

Yildirim N, Hao N, Dohlman HG, Elston TC. Yildirim N, et al. Methods Enzymol. 2004;389:383-98. doi: 10.1016/S0076-6879(04)89023-2. Methods Enzymol. 2004. PMID: 15313578 Review.

4

beta2-adrenergic receptor signaling and desensitization elucidated by quantitative modeling of real time cAMP dynamics.

Violin JD, DiPilato LM, Yildirim N, Elston TC, Zhang J, Lefkowitz RJ. Violin JD, et al. Among authors: yildirim n. J Biol Chem. 2008 Feb 1;283(5):2949-61. doi: 10.1074/jbc.M707009200. Epub 2007 Nov 28. J Biol Chem. 2008. PMID: 18045878 Free article.

5

Differential transcriptional regulation by alternatively designed mechanisms: A mathematical modeling approach.

Yildirim N, Aktas ME, Ozcan SN, Akbas E, Ay A. Yildirim N, et al. In Silico Biol. 2017;12(3-4):95-127. doi: 10.3233/ISB-160467. In Silico Biol. 2017. PMID: 27497472

6

Mathematical modeling reveals differential regulation of MAPK activity by phosphatase proteins in the yeast pheromone response pathway.

Dyjack N, Azeredo-Tseng C, Yildirim N. Dyjack N, et al. Among authors: yildirim n. Mol Biosyst. 2017 Jun 27;13(7):1323-1335. doi: 10.1039/c7mb00213k. Mol Biosyst. 2017. PMID: 28581003

7

Dynamics matter: differences and similarities between alternatively designed mechanisms.

Ay A, Yildirim N. Ay A, et al. Among authors: yildirim n. Mol Biosyst. 2014 Jul;10(7):1948-57. doi: 10.1039/c4mb00159a. Epub 2014 May 9. Mol Biosyst. 2014. PMID: 24817276

8

Deterministic and stochastic simulation and analysis of biochemical reaction networks the lactose operon example.

Yildirim N, Kazanci C. Yildirim N, et al. Methods Enzymol. 2011;487:371-95. doi: 10.1016/B978-0-12-381270-4.00012-3. Methods Enzymol. 2011. PMID: 21187231

9

Mathematical modeling deciphers the benefits of alternatively-designed conserved activatory and inhibitory gene circuits.

Ay A, Wilner N, Yildirim N. Ay A, et al. Among authors: yildirim n. Mol Biosyst. 2015 Jul;11(7):2017-30. doi: 10.1039/c5mb00269a. Mol Biosyst. 2015. PMID: 25966646

10

Mathematical modeling of the low and high affinity arabinose transport systems in Escherichia coli.

Yildirim N. Yildirim N. Mol Biosyst. 2012 Apr;8(4):1319-24. doi: 10.1039/c2mb05352g. Epub 2012 Feb 7. Mol Biosyst. 2012. PMID: 22314998

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