De Gioia L - Search Results

1

Loop 7 of E2 enzymes: an ancestral conserved functional motif involved in the E2-mediated steps of the ubiquitination cascade.

Papaleo E, Casiraghi N, Arrigoni A, Vanoni M, Coccetti P, De Gioia L. Papaleo E, et al. Among authors: de gioia l. PLoS One. 2012;7(7):e40786. doi: 10.1371/journal.pone.0040786. Epub 2012 Jul 18. PLoS One. 2012. PMID: 22815819 Free PMC article.

2

The yeast cyclin-dependent kinase inhibitor Sic1 and mammalian p27Kip1 are functional homologues with a structurally conserved inhibitory domain.

Barberis M, De Gioia L, Ruzzene M, Sarno S, Coccetti P, Fantucci P, Vanoni M, Alberghina L. Barberis M, et al. Among authors: de gioia l. Biochem J. 2005 May 1;387(Pt 3):639-47. doi: 10.1042/BJ20041299. Biochem J. 2005. PMID: 15649124 Free PMC article.

3

Three-dimensional structure of the catalytic domain of the yeast beta-(1,3)-glucan transferase Gas1: a molecular modeling investigation.

Papaleo E, Fantucci P, Vai M, De Gioia L. Papaleo E, et al. Among authors: de gioia l. J Mol Model. 2006 Jan;12(2):237-48. doi: 10.1007/s00894-005-0025-7. Epub 2005 Oct 21. J Mol Model. 2006. PMID: 16240096

4

Identification and in silico analysis of a new group of double-histone fold-containing proteins.

Greco C, Sacco E, Vanoni M, De Gioia L. Greco C, et al. Among authors: de gioia l. J Mol Model. 2005 Dec;12(1):76-84. doi: 10.1007/s00894-005-0008-8. Epub 2005 Oct 25. J Mol Model. 2005. PMID: 16247600

5

The isolated catalytic hairpin of the Ras-specific guanine nucleotide exchange factor Cdc25Mm retains nucleotide dissociation activity but has impaired nucleotide exchange activity.

Sacco E, Fantinato S, Manzoni R, Metalli D, De Gioia L, Fantucci P, Alberghina L, Vanoni M. Sacco E, et al. Among authors: de gioia l. FEBS Lett. 2005 Dec 19;579(30):6851-8. doi: 10.1016/j.febslet.2005.11.024. Epub 2005 Nov 28. FEBS Lett. 2005. PMID: 16325815 Free article.

6

Flexibility and enzymatic cold-adaptation: a comparative molecular dynamics investigation of the elastase family.

Papaleo E, Riccardi L, Villa C, Fantucci P, De Gioia L. Papaleo E, et al. Among authors: de gioia l. Biochim Biophys Acta. 2006 Aug;1764(8):1397-406. doi: 10.1016/j.bbapap.2006.06.005. Epub 2006 Jul 1. Biochim Biophys Acta. 2006. PMID: 16920043

7

Optimization of electrostatics as a strategy for cold-adaptation: a case study of cold- and warm-active elastases.

Papaleo E, Olufsen M, De Gioia L, Brandsdal BO. Papaleo E, et al. Among authors: de gioia l. J Mol Graph Model. 2007 Jul;26(1):93-103. doi: 10.1016/j.jmgm.2006.09.012. Epub 2006 Sep 30. J Mol Graph Model. 2007. PMID: 17084098

8

Validation of protein models by a neural network approach.

Mereghetti P, Ganadu ML, Papaleo E, Fantucci P, De Gioia L. Mereghetti P, et al. Among authors: de gioia l. BMC Bioinformatics. 2008 Jan 29;9:66. doi: 10.1186/1471-2105-9-66. BMC Bioinformatics. 2008. PMID: 18230168 Free PMC article.

9

Protein flexibility in psychrophilic and mesophilic trypsins. Evidence of evolutionary conservation of protein dynamics in trypsin-like serine-proteases.

Papaleo E, Pasi M, Riccardi L, Sambi I, Fantucci P, De Gioia L. Papaleo E, et al. Among authors: de gioia l. FEBS Lett. 2008 Mar 19;582(6):1008-18. doi: 10.1016/j.febslet.2008.02.048. Epub 2008 Feb 26. FEBS Lett. 2008. PMID: 18307991 Free article.

10

Free-energy landscape, principal component analysis, and structural clustering to identify representative conformations from molecular dynamics simulations: the myoglobin case.

Papaleo E, Mereghetti P, Fantucci P, Grandori R, De Gioia L. Papaleo E, et al. Among authors: de gioia l. J Mol Graph Model. 2009 Jun-Jul;27(8):889-99. doi: 10.1016/j.jmgm.2009.01.006. Epub 2009 Feb 6. J Mol Graph Model. 2009. PMID: 19264523

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