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DanteR: an extensible R-based tool for quantitative analysis of -omics data.
Taverner T, Karpievitch YV, Polpitiya AD, Brown JN, Dabney AR, Anderson GA, Smith RD. Taverner T, et al. Among authors: brown jn. Bioinformatics. 2012 Sep 15;28(18):2404-6. doi: 10.1093/bioinformatics/bts449. Epub 2012 Jul 19. Bioinformatics. 2012. PMID: 22815360 Free PMC article.
A comparative analysis of computational approaches to relative protein quantification using peptide peak intensities in label-free LC-MS proteomics experiments.
Matzke MM, Brown JN, Gritsenko MA, Metz TO, Pounds JG, Rodland KD, Shukla AK, Smith RD, Waters KM, McDermott JE, Webb-Robertson BJ. Matzke MM, et al. Among authors: brown jn. Proteomics. 2013 Feb;13(3-4):493-503. doi: 10.1002/pmic.201200269. Epub 2012 Nov 8. Proteomics. 2013. PMID: 23019139 Free PMC article. Review.
Review, evaluation, and discussion of the challenges of missing value imputation for mass spectrometry-based label-free global proteomics.
Webb-Robertson BJ, Wiberg HK, Matzke MM, Brown JN, Wang J, McDermott JE, Smith RD, Rodland KD, Metz TO, Pounds JG, Waters KM. Webb-Robertson BJ, et al. Among authors: brown jn. J Proteome Res. 2015 May 1;14(5):1993-2001. doi: 10.1021/pr501138h. Epub 2015 Apr 22. J Proteome Res. 2015. PMID: 25855118 Free PMC article. Review.
Suite of activity-based probes for cellulose-degrading enzymes.
Chauvigné-Hines LM, Anderson LN, Weaver HM, Brown JN, Koech PK, Nicora CD, Hofstad BA, Smith RD, Wilkins MJ, Callister SJ, Wright AT. Chauvigné-Hines LM, et al. Among authors: brown jn. J Am Chem Soc. 2012 Dec 19;134(50):20521-32. doi: 10.1021/ja309790w. Epub 2012 Dec 6. J Am Chem Soc. 2012. PMID: 23176123 Free PMC article.
Expediting SRM assay development for large-scale targeted proteomics experiments.
Wu C, Shi T, Brown JN, He J, Gao Y, Fillmore TL, Shukla AK, Moore RJ, Camp DG 2nd, Rodland KD, Qian WJ, Liu T, Smith RD. Wu C, et al. Among authors: brown jn. J Proteome Res. 2014 Oct 3;13(10):4479-87. doi: 10.1021/pr500500d. Epub 2014 Sep 4. J Proteome Res. 2014. PMID: 25145539 Free PMC article.
183 results