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The APOBEC3C crystal structure and the interface for HIV-1 Vif binding.
Kitamura S, Ode H, Nakashima M, Imahashi M, Naganawa Y, Kurosawa T, Yokomaku Y, Yamane T, Watanabe N, Suzuki A, Sugiura W, Iwatani Y. Kitamura S, et al. Among authors: nakashima m. Nat Struct Mol Biol. 2012 Oct;19(10):1005-10. doi: 10.1038/nsmb.2378. Epub 2012 Sep 23. Nat Struct Mol Biol. 2012. PMID: 23001005
Unique Flap Conformation in an HIV-1 Protease with High-Level Darunavir Resistance.
Nakashima M, Ode H, Suzuki K, Fujino M, Maejima M, Kimura Y, Masaoka T, Hattori J, Matsuda M, Hachiya A, Yokomaku Y, Suzuki A, Watanabe N, Sugiura W, Iwatani Y. Nakashima M, et al. Front Microbiol. 2016 Feb 3;7:61. doi: 10.3389/fmicb.2016.00061. eCollection 2016. Front Microbiol. 2016. PMID: 26870021 Free PMC article.
Structural Insights into HIV-1 Vif-APOBEC3F Interaction.
Nakashima M, Ode H, Kawamura T, Kitamura S, Naganawa Y, Awazu H, Tsuzuki S, Matsuoka K, Nemoto M, Hachiya A, Sugiura W, Yokomaku Y, Watanabe N, Iwatani Y. Nakashima M, et al. J Virol. 2015 Nov 4;90(2):1034-47. doi: 10.1128/JVI.02369-15. Print 2016 Jan 15. J Virol. 2015. PMID: 26537685 Free PMC article.
Molecular dynamics simulation in virus research.
Ode H, Nakashima M, Kitamura S, Sugiura W, Sato H. Ode H, et al. Among authors: nakashima m. Front Microbiol. 2012 Jul 19;3:258. doi: 10.3389/fmicb.2012.00258. eCollection 2012. Front Microbiol. 2012. PMID: 22833741 Free PMC article.
Conformational Flexibility in Capsids Encoded by the Caliciviridae.
Lewis CB, Sherry L, Conley MJ, Nakashima M, Akbar S, Govindan N, Hosie MJ, Bhella D. Lewis CB, et al. Among authors: nakashima m. Viruses. 2024 Nov 26;16(12):1835. doi: 10.3390/v16121835. Viruses. 2024. PMID: 39772145 Free PMC article. Review.
2,159 results