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A metagenomics portal for a democratized sequencing world.
Wilke A, Glass EM, Bartels D, Bischof J, Braithwaite D, D'Souza M, Gerlach W, Harrison T, Keegan K, Matthews H, Kottmann R, Paczian T, Tang W, Trimble WL, Yilmaz P, Wilkening J, Desai N, Meyer F. Wilke A, et al. Among authors: trimble wl. Methods Enzymol. 2013;531:487-523. doi: 10.1016/B978-0-12-407863-5.00022-8. Methods Enzymol. 2013. PMID: 24060134
The MG-RAST metagenomics database and portal in 2015.
Wilke A, Bischof J, Gerlach W, Glass E, Harrison T, Keegan KP, Paczian T, Trimble WL, Bagchi S, Grama A, Chaterji S, Meyer F. Wilke A, et al. Among authors: trimble wl. Nucleic Acids Res. 2016 Jan 4;44(D1):D590-4. doi: 10.1093/nar/gkv1322. Epub 2015 Dec 9. Nucleic Acids Res. 2016. PMID: 26656948 Free PMC article.
The MG-RAST API explorer: an on-ramp for RESTful query composition.
Paczian T, Trimble WL, Gerlach W, Harrison T, Wilke A, Meyer F. Paczian T, et al. Among authors: trimble wl. BMC Bioinformatics. 2019 Nov 8;20(1):561. doi: 10.1186/s12859-019-2993-0. BMC Bioinformatics. 2019. PMID: 31703549 Free PMC article.
The complete genome sequence for putative H₂- and S-oxidizer Candidatus Sulfuricurvum sp., assembled de novo from an aquifer-derived metagenome.
Handley KM, Bartels D, O'Loughlin EJ, Williams KH, Trimble WL, Skinner K, Gilbert JA, Desai N, Glass EM, Paczian T, Wilke A, Antonopoulos D, Kemner KM, Meyer F. Handley KM, et al. Among authors: trimble wl. Environ Microbiol. 2014 Nov;16(11):3443-62. doi: 10.1111/1462-2920.12453. Epub 2014 Apr 21. Environ Microbiol. 2014. PMID: 24628880
17 results