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Arena3D: visualization of biological networks in 3D.
Pavlopoulos GA, O'Donoghue SI, Satagopam VP, Soldatos TG, Pafilis E, Schneider R. Pavlopoulos GA, et al. BMC Syst Biol. 2008 Nov 28;2:104. doi: 10.1186/1752-0509-2-104. BMC Syst Biol. 2008. PMID: 19040715 Free PMC article.
jClust: a clustering and visualization toolbox.
Pavlopoulos GA, Moschopoulos CN, Hooper SD, Schneider R, Kossida S. Pavlopoulos GA, et al. Bioinformatics. 2009 Aug 1;25(15):1994-6. doi: 10.1093/bioinformatics/btp330. Epub 2009 May 19. Bioinformatics. 2009. PMID: 19454618 Free PMC article.
GIBA: a clustering tool for detecting protein complexes.
Moschopoulos CN, Pavlopoulos GA, Schneider R, Likothanassis SD, Kossida S. Moschopoulos CN, et al. Among authors: pavlopoulos ga. BMC Bioinformatics. 2009 Jun 16;10 Suppl 6(Suppl 6):S11. doi: 10.1186/1471-2105-10-S6-S11. BMC Bioinformatics. 2009. PMID: 19534736 Free PMC article.
A reference guide for tree analysis and visualization.
Pavlopoulos GA, Soldatos TG, Barbosa-Silva A, Schneider R. Pavlopoulos GA, et al. BioData Min. 2010 Feb 22;3(1):1. doi: 10.1186/1756-0381-3-1. BioData Min. 2010. PMID: 20175922 Free PMC article.
Using graph theory to analyze biological networks.
Pavlopoulos GA, Secrier M, Moschopoulos CN, Soldatos TG, Kossida S, Aerts J, Schneider R, Bagos PG. Pavlopoulos GA, et al. BioData Min. 2011 Apr 28;4:10. doi: 10.1186/1756-0381-4-10. BioData Min. 2011. PMID: 21527005 Free PMC article.
81 results