Wojtowicz D - Search Results

1

Crystal structures of the outer membrane domain of intimin and invasin from enterohemorrhagic E. coli and enteropathogenic Y. pseudotuberculosis.

Fairman JW, Dautin N, Wojtowicz D, Liu W, Noinaj N, Barnard TJ, Udho E, Przytycka TM, Cherezov V, Buchanan SK. Fairman JW, et al. Among authors: wojtowicz d. Structure. 2012 Jul 3;20(7):1233-43. doi: 10.1016/j.str.2012.04.011. Epub 2012 May 31. Structure. 2012. PMID: 22658748 Free PMC article.

2

Teasing apart translational and transcriptional components of stochastic variations in eukaryotic gene expression.

Salari R, Wojtowicz D, Zheng J, Levens D, Pilpel Y, Przytycka TM. Salari R, et al. Among authors: wojtowicz d. PLoS Comput Biol. 2012;8(8):e1002644. doi: 10.1371/journal.pcbi.1002644. Epub 2012 Aug 30. PLoS Comput Biol. 2012. PMID: 22956896 Free PMC article.

3

Transcription-dependent dynamic supercoiling is a short-range genomic force.

Kouzine F, Gupta A, Baranello L, Wojtowicz D, Ben-Aissa K, Liu J, Przytycka TM, Levens D. Kouzine F, et al. Among authors: wojtowicz d. Nat Struct Mol Biol. 2013 Mar;20(3):396-403. doi: 10.1038/nsmb.2517. Epub 2013 Feb 17. Nat Struct Mol Biol. 2013. PMID: 23416947 Free PMC article.

4

Modeling cell heterogeneity: from single-cell variations to mixed cells.

Batchelor E, Kann MG, Przytycka TM, Raphael BJ, Wojtowicz D. Batchelor E, et al. Among authors: wojtowicz d. Pac Symp Biocomput. 2013:445-50. Pac Symp Biocomput. 2013. PMID: 23424148 Free article.

5

The genome-wide distribution of non-B DNA motifs is shaped by operon structure and suggests the transcriptional importance of non-B DNA structures in Escherichia coli.

Du X, Wojtowicz D, Bowers AA, Levens D, Benham CJ, Przytycka TM. Du X, et al. Among authors: wojtowicz d. Nucleic Acids Res. 2013 Jul;41(12):5965-77. doi: 10.1093/nar/gkt308. Epub 2013 Apr 25. Nucleic Acids Res. 2013. PMID: 23620297 Free PMC article.

6

Global regulation of promoter melting in naive lymphocytes.

Kouzine F, Wojtowicz D, Yamane A, Resch W, Kieffer-Kwon KR, Bandle R, Nelson S, Nakahashi H, Awasthi P, Feigenbaum L, Menoni H, Hoeijmakers J, Vermeulen W, Ge H, Przytycka TM, Levens D, Casellas R. Kouzine F, et al. Among authors: wojtowicz d. Cell. 2013 May 23;153(5):988-99. doi: 10.1016/j.cell.2013.04.033. Cell. 2013. PMID: 23706737 Free PMC article.

7

DNA break mapping reveals topoisomerase II activity genome-wide.

Baranello L, Kouzine F, Wojtowicz D, Cui K, Przytycka TM, Zhao K, Levens D. Baranello L, et al. Among authors: wojtowicz d. Int J Mol Sci. 2014 Jul 23;15(7):13111-22. doi: 10.3390/ijms150713111. Int J Mol Sci. 2014. PMID: 25056547 Free PMC article.

8

Potential non-B DNA regions in the human genome are associated with higher rates of nucleotide mutation and expression variation.

Du X, Gertz EM, Wojtowicz D, Zhabinskaya D, Levens D, Benham CJ, Schäffer AA, Przytycka TM. Du X, et al. Among authors: wojtowicz d. Nucleic Acids Res. 2014 Nov 10;42(20):12367-79. doi: 10.1093/nar/gku921. Epub 2014 Oct 21. Nucleic Acids Res. 2014. PMID: 25336616 Free PMC article.

9

Correlated rigid modes in protein families.

Striegel DA, Wojtowicz D, Przytycka TM, Periwal V. Striegel DA, et al. Among authors: wojtowicz d. Phys Biol. 2016 Apr 11;13(2):025003. doi: 10.1088/1478-3975/13/2/025003. Phys Biol. 2016. PMID: 27063781 Free PMC article.

10

Ups and Downs of Poised RNA Polymerase II in B-Cells.

Dao P, Wojtowicz D, Nelson S, Levens D, Przytycka TM. Dao P, et al. Among authors: wojtowicz d. PLoS Comput Biol. 2016 Apr 14;12(4):e1004821. doi: 10.1371/journal.pcbi.1004821. eCollection 2016 Apr. PLoS Comput Biol. 2016. PMID: 27078128 Free PMC article.

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