Crawford GE - Search Results

1

H3K4me3 inversely correlates with DNA methylation at a large class of non-CpG-island-containing start sites.

Balasubramanian D, Akhtar-Zaidi B, Song L, Bartels CF, Veigl M, Beard L, Myeroff L, Guda K, Lutterbaugh J, Willis J, Crawford GE, Markowitz SD, Scacheri PC. Balasubramanian D, et al. Among authors: crawford ge. Genome Med. 2012 May 28;4(5):47. doi: 10.1186/gm346. Genome Med. 2012. PMID: 22640407 Free PMC article.

2

Genomic distribution of CHD7 on chromatin tracks H3K4 methylation patterns.

Schnetz MP, Bartels CF, Shastri K, Balasubramanian D, Zentner GE, Balaji R, Zhang X, Song L, Wang Z, Laframboise T, Crawford GE, Scacheri PC. Schnetz MP, et al. Among authors: crawford ge. Genome Res. 2009 Apr;19(4):590-601. doi: 10.1101/gr.086983.108. Epub 2009 Feb 27. Genome Res. 2009. PMID: 19251738 Free PMC article.

3

CHD7 targets active gene enhancer elements to modulate ES cell-specific gene expression.

Schnetz MP, Handoko L, Akhtar-Zaidi B, Bartels CF, Pereira CF, Fisher AG, Adams DJ, Flicek P, Crawford GE, Laframboise T, Tesar P, Wei CL, Scacheri PC. Schnetz MP, et al. Among authors: crawford ge. PLoS Genet. 2010 Jul 15;6(7):e1001023. doi: 10.1371/journal.pgen.1001023. PLoS Genet. 2010. PMID: 20657823 Free PMC article.

4

Statistics for ChIP-chip and DNase hypersensitivity experiments on NimbleGen arrays.

Scacheri PC, Crawford GE, Davis S. Scacheri PC, et al. Among authors: crawford ge. Methods Enzymol. 2006;411:270-82. doi: 10.1016/S0076-6879(06)11014-9. Methods Enzymol. 2006. PMID: 16939795 Review.

5

DNase-seq predicts regions of rotational nucleosome stability across diverse human cell types.

Winter DR, Song L, Mukherjee S, Furey TS, Crawford GE. Winter DR, et al. Among authors: crawford ge. Genome Res. 2013 Jul;23(7):1118-29. doi: 10.1101/gr.150482.112. Epub 2013 May 8. Genome Res. 2013. PMID: 23657885 Free PMC article.

6

DNase-seq: a high-resolution technique for mapping active gene regulatory elements across the genome from mammalian cells.

Song L, Crawford GE. Song L, et al. Among authors: crawford ge. Cold Spring Harb Protoc. 2010 Feb;2010(2):pdb.prot5384. doi: 10.1101/pdb.prot5384. Cold Spring Harb Protoc. 2010. PMID: 20150147 Free PMC article. No abstract available.

7

High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells.

Boyle AP, Song L, Lee BK, London D, Keefe D, Birney E, Iyer VR, Crawford GE, Furey TS. Boyle AP, et al. Among authors: crawford ge. Genome Res. 2011 Mar;21(3):456-64. doi: 10.1101/gr.112656.110. Epub 2010 Nov 24. Genome Res. 2011. PMID: 21106903 Free PMC article.

8

Epigenomic comparison reveals activation of "seed" enhancers during transition from naive to primed pluripotency.

Factor DC, Corradin O, Zentner GE, Saiakhova A, Song L, Chenoweth JG, McKay RD, Crawford GE, Scacheri PC, Tesar PJ. Factor DC, et al. Among authors: crawford ge. Cell Stem Cell. 2014 Jun 5;14(6):854-63. doi: 10.1016/j.stem.2014.05.005. Cell Stem Cell. 2014. PMID: 24905169 Free PMC article.

9

DNase-chip: a high-resolution method to identify DNase I hypersensitive sites using tiled microarrays.

Crawford GE, Davis S, Scacheri PC, Renaud G, Halawi MJ, Erdos MR, Green R, Meltzer PS, Wolfsberg TG, Collins FS. Crawford GE, et al. Nat Methods. 2006 Jul;3(7):503-9. doi: 10.1038/nmeth888. Nat Methods. 2006. PMID: 16791207 Free PMC article.

10

Patterns of regulatory activity across diverse human cell types predict tissue identity, transcription factor binding, and long-range interactions.

Sheffield NC, Thurman RE, Song L, Safi A, Stamatoyannopoulos JA, Lenhard B, Crawford GE, Furey TS. Sheffield NC, et al. Among authors: crawford ge. Genome Res. 2013 May;23(5):777-88. doi: 10.1101/gr.152140.112. Epub 2013 Mar 12. Genome Res. 2013. PMID: 23482648 Free PMC article.

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