Zimmer R - Search Results

1

Ultrashort and progressive 4sU-tagging reveals key characteristics of RNA processing at nucleotide resolution.

Windhager L, Bonfert T, Burger K, Ruzsics Z, Krebs S, Kaufmann S, Malterer G, L'Hernault A, Schilhabel M, Schreiber S, Rosenstiel P, Zimmer R, Eick D, Friedel CC, Dölken L. Windhager L, et al. Among authors: zimmer r. Genome Res. 2012 Oct;22(10):2031-42. doi: 10.1101/gr.131847.111. Epub 2012 Apr 26. Genome Res. 2012. PMID: 22539649 Free PMC article.

2

Toward the complete interactome.

Friedel CC, Zimmer R. Friedel CC, et al. Among authors: zimmer r. Nat Biotechnol. 2006 Jun;24(6):614-5; author reply 615. doi: 10.1038/nbt0606-614. Nat Biotechnol. 2006. PMID: 16763580 No abstract available.

3

Reliable gene signatures for microarray classification: assessment of stability and performance.

Davis CA, Gerick F, Hintermair V, Friedel CC, Fundel K, Küffner R, Zimmer R. Davis CA, et al. Among authors: zimmer r. Bioinformatics. 2006 Oct 1;22(19):2356-63. doi: 10.1093/bioinformatics/btl400. Epub 2006 Jul 31. Bioinformatics. 2006. PMID: 16882647

4

Inferring topology from clustering coefficients in protein-protein interaction networks.

Friedel CC, Zimmer R. Friedel CC, et al. Among authors: zimmer r. BMC Bioinformatics. 2006 Nov 30;7:519. doi: 10.1186/1471-2105-7-519. BMC Bioinformatics. 2006. PMID: 17137490 Free PMC article.

5

Analysis of intraviral protein-protein interactions of the SARS coronavirus ORFeome.

von Brunn A, Teepe C, Simpson JC, Pepperkok R, Friedel CC, Zimmer R, Roberts R, Baric R, Haas J. von Brunn A, et al. Among authors: zimmer r. PLoS One. 2007 May 23;2(5):e459. doi: 10.1371/journal.pone.0000459. PLoS One. 2007. PMID: 17520018 Free PMC article.

6

Influence of degree correlations on network structure and stability in protein-protein interaction networks.

Friedel CC, Zimmer R. Friedel CC, et al. Among authors: zimmer r. BMC Bioinformatics. 2007 Aug 9;8:297. doi: 10.1186/1471-2105-8-297. BMC Bioinformatics. 2007. PMID: 17688687 Free PMC article.

7

ProCope--protein complex prediction and evaluation.

Krumsiek J, Friedel CC, Zimmer R. Krumsiek J, et al. Among authors: zimmer r. Bioinformatics. 2008 Sep 15;24(18):2115-6. doi: 10.1093/bioinformatics/btn376. Epub 2008 Jul 17. Bioinformatics. 2008. PMID: 18635566

8

High-resolution gene expression profiling for simultaneous kinetic parameter analysis of RNA synthesis and decay.

Dölken L, Ruzsics Z, Rädle B, Friedel CC, Zimmer R, Mages J, Hoffmann R, Dickinson P, Forster T, Ghazal P, Koszinowski UH. Dölken L, et al. Among authors: zimmer r. RNA. 2008 Sep;14(9):1959-72. doi: 10.1261/rna.1136108. Epub 2008 Jul 24. RNA. 2008. PMID: 18658122 Free PMC article.

9

FERN - a Java framework for stochastic simulation and evaluation of reaction networks.

Erhard F, Friedel CC, Zimmer R. Erhard F, et al. Among authors: zimmer r. BMC Bioinformatics. 2008 Aug 29;9:356. doi: 10.1186/1471-2105-9-356. BMC Bioinformatics. 2008. PMID: 18755046 Free PMC article.

10

Identifying the topology of protein complexes from affinity purification assays.

Friedel CC, Zimmer R. Friedel CC, et al. Among authors: zimmer r. Bioinformatics. 2009 Aug 15;25(16):2140-6. doi: 10.1093/bioinformatics/btp353. Epub 2009 Jun 8. Bioinformatics. 2009. PMID: 19505940 Free PMC article.

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