Baker A - Search Results

1

Replication fork polarity gradients revealed by megabase-sized U-shaped replication timing domains in human cell lines.

Baker A, Audit B, Chen CL, Moindrot B, Leleu A, Guilbaud G, Rappailles A, Vaillant C, Goldar A, Mongelard F, d'Aubenton-Carafa Y, Hyrien O, Thermes C, Arneodo A. Baker A, et al. PLoS Comput Biol. 2012;8(4):e1002443. doi: 10.1371/journal.pcbi.1002443. Epub 2012 Apr 5. PLoS Comput Biol. 2012. PMID: 22496629 Free PMC article.

2

Linking the DNA strand asymmetry to the spatio-temporal replication program. I. About the role of the replication fork polarity in genome evolution.

Baker A, Julienne H, Chen CL, Audit B, d'Aubenton-Carafa Y, Thermes C, Arneodo A. Baker A, et al. Eur Phys J E Soft Matter. 2012 Sep;35(9):92. doi: 10.1140/epje/i2012-12092-y. Epub 2012 Sep 26. Eur Phys J E Soft Matter. 2012. PMID: 23001787

3

Linking the DNA strand asymmetry to the spatio-temporal replication program: II. Accounting for neighbor-dependent substitution rates.

Baker A, Chen CL, Julienne H, Audit B, d'Aubenton-Carafa Y, Thermes C, Arneodo A. Baker A, et al. Eur Phys J E Soft Matter. 2012 Nov;35(11):123. doi: 10.1140/epje/i2012-12123-9. Epub 2012 Nov 27. Eur Phys J E Soft Matter. 2012. PMID: 23179013

4

Replication-associated mutational asymmetry in the human genome.

Chen CL, Duquenne L, Audit B, Guilbaud G, Rappailles A, Baker A, Huvet M, d'Aubenton-Carafa Y, Hyrien O, Arneodo A, Thermes C. Chen CL, et al. Among authors: baker a. Mol Biol Evol. 2011 Aug;28(8):2327-37. doi: 10.1093/molbev/msr056. Epub 2011 Mar 2. Mol Biol Evol. 2011. PMID: 21368316

5

Evidence for sequential and increasing activation of replication origins along replication timing gradients in the human genome.

Guilbaud G, Rappailles A, Baker A, Chen CL, Arneodo A, Goldar A, d'Aubenton-Carafa Y, Thermes C, Audit B, Hyrien O. Guilbaud G, et al. Among authors: baker a. PLoS Comput Biol. 2011 Dec;7(12):e1002322. doi: 10.1371/journal.pcbi.1002322. Epub 2011 Dec 29. PLoS Comput Biol. 2011. PMID: 22219720 Free PMC article.

6

3D chromatin conformation correlates with replication timing and is conserved in resting cells.

Moindrot B, Audit B, Klous P, Baker A, Thermes C, de Laat W, Bouvet P, Mongelard F, Arneodo A. Moindrot B, et al. Among authors: baker a. Nucleic Acids Res. 2012 Oct;40(19):9470-81. doi: 10.1093/nar/gks736. Epub 2012 Aug 8. Nucleic Acids Res. 2012. PMID: 22879376 Free PMC article.

7

Megabase replication domains along the human genome: relation to chromatin structure and genome organisation.

Audit B, Zaghloul L, Baker A, Arneodo A, Chen CL, d'Aubenton-Carafa Y, Thermes C. Audit B, et al. Among authors: baker a. Subcell Biochem. 2013;61:57-80. doi: 10.1007/978-94-007-4525-4_3. Subcell Biochem. 2013. PMID: 23150246 Review.

8

Multiscale analysis of genome-wide replication timing profiles using a wavelet-based signal-processing algorithm.

Audit B, Baker A, Chen CL, Rappailles A, Guilbaud G, Julienne H, Goldar A, d'Aubenton-Carafa Y, Hyrien O, Thermes C, Arneodo A. Audit B, et al. Among authors: baker a. Nat Protoc. 2013 Jan;8(1):98-110. doi: 10.1038/nprot.2012.145. Epub 2012 Dec 13. Nat Protoc. 2013. PMID: 23237832

9

From simple bacterial and archaeal replicons to replication N/U-domains.

Hyrien O, Rappailles A, Guilbaud G, Baker A, Chen CL, Goldar A, Petryk N, Kahli M, Ma E, d'Aubenton-Carafa Y, Audit B, Thermes C, Arneodo A. Hyrien O, et al. Among authors: baker a. J Mol Biol. 2013 Nov 29;425(23):4673-89. doi: 10.1016/j.jmb.2013.09.021. Epub 2013 Oct 3. J Mol Biol. 2013. PMID: 24095859 Review.

10

Inferring where and when replication initiates from genome-wide replication timing data.

Baker A, Audit B, Yang SC, Bechhoefer J, Arneodo A. Baker A, et al. Phys Rev Lett. 2012 Jun 29;108(26):268101. doi: 10.1103/PhysRevLett.108.268101. Epub 2012 Jun 29. Phys Rev Lett. 2012. PMID: 23005017

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