Zagordi O - Search Results

1

Ultra-deep sequencing for the analysis of viral populations.

Beerenwinkel N, Zagordi O. Beerenwinkel N, et al. Among authors: zagordi o. Curr Opin Virol. 2011 Nov;1(5):413-8. doi: 10.1016/j.coviro.2011.07.008. Epub 2011 Aug 17. Curr Opin Virol. 2011. PMID: 22440844 Review.

2

Deep sequencing of a genetically heterogeneous sample: local haplotype reconstruction and read error correction.

Zagordi O, Geyrhofer L, Roth V, Beerenwinkel N. Zagordi O, et al. J Comput Biol. 2010 Mar;17(3):417-28. doi: 10.1089/cmb.2009.0164. J Comput Biol. 2010. PMID: 20377454

3

Error correction of next-generation sequencing data and reliable estimation of HIV quasispecies.

Zagordi O, Klein R, Däumer M, Beerenwinkel N. Zagordi O, et al. Nucleic Acids Res. 2010 Nov;38(21):7400-9. doi: 10.1093/nar/gkq655. Epub 2010 Jul 29. Nucleic Acids Res. 2010. PMID: 20671025 Free PMC article.

4

ShoRAH: estimating the genetic diversity of a mixed sample from next-generation sequencing data.

Zagordi O, Bhattacharya A, Eriksson N, Beerenwinkel N. Zagordi O, et al. BMC Bioinformatics. 2011 Apr 26;12:119. doi: 10.1186/1471-2105-12-119. BMC Bioinformatics. 2011. PMID: 21521499 Free PMC article.

5

Read length versus depth of coverage for viral quasispecies reconstruction.

Zagordi O, Däumer M, Beisel C, Beerenwinkel N. Zagordi O, et al. PLoS One. 2012;7(10):e47046. doi: 10.1371/journal.pone.0047046. Epub 2012 Oct 3. PLoS One. 2012. PMID: 23056573 Free PMC article.

6

Probabilistic inference of viral quasispecies subject to recombination.

Töpfer A, Zagordi O, Prabhakaran S, Roth V, Halperin E, Beerenwinkel N. Töpfer A, et al. Among authors: zagordi o. J Comput Biol. 2013 Feb;20(2):113-23. doi: 10.1089/cmb.2012.0232. J Comput Biol. 2013. PMID: 23383997 Free PMC article.

7

Next-generation sequencing of HIV-1 RNA genomes: determination of error rates and minimizing artificial recombination.

Di Giallonardo F, Zagordi O, Duport Y, Leemann C, Joos B, Künzli-Gontarczyk M, Bruggmann R, Beerenwinkel N, Günthard HF, Metzner KJ. Di Giallonardo F, et al. Among authors: zagordi o. PLoS One. 2013 Sep 18;8(9):e74249. doi: 10.1371/journal.pone.0074249. eCollection 2013. PLoS One. 2013. PMID: 24058534 Free PMC article.

8

Accurate single nucleotide variant detection in viral populations by combining probabilistic clustering with a statistical test of strand bias.

McElroy K, Zagordi O, Bull R, Luciani F, Beerenwinkel N. McElroy K, et al. Among authors: zagordi o. BMC Genomics. 2013 Jul 24;14:501. doi: 10.1186/1471-2164-14-501. BMC Genomics. 2013. PMID: 23879730 Free PMC article.

9

HIV Haplotype Inference Using a Propagating Dirichlet Process Mixture Model.

Prabhakaran S, Rey M, Zagordi O, Beerenwinkel N, Roth V. Prabhakaran S, et al. Among authors: zagordi o. IEEE/ACM Trans Comput Biol Bioinform. 2014 Jan-Feb;11(1):182-91. doi: 10.1109/TCBB.2013.145. IEEE/ACM Trans Comput Biol Bioinform. 2014. PMID: 26355517

10

MinVar: A rapid and versatile tool for HIV-1 drug resistance genotyping by deep sequencing.

Huber M, Metzner KJ, Geissberger FD, Shah C, Leemann C, Klimkait T, Böni J, Trkola A, Zagordi O. Huber M, et al. Among authors: zagordi o. J Virol Methods. 2017 Feb;240:7-13. doi: 10.1016/j.jviromet.2016.11.008. Epub 2016 Nov 17. J Virol Methods. 2017. PMID: 27867045 Free article.

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