Beerenwinkel N - Search Results

1

Ultra-deep sequencing for the analysis of viral populations.

Beerenwinkel N, Zagordi O. Beerenwinkel N, et al. Curr Opin Virol. 2011 Nov;1(5):413-8. doi: 10.1016/j.coviro.2011.07.008. Epub 2011 Aug 17. Curr Opin Virol. 2011. PMID: 22440844 Review.

2

Deep sequencing of a genetically heterogeneous sample: local haplotype reconstruction and read error correction.

Zagordi O, Geyrhofer L, Roth V, Beerenwinkel N. Zagordi O, et al. Among authors: beerenwinkel n. J Comput Biol. 2010 Mar;17(3):417-28. doi: 10.1089/cmb.2009.0164. J Comput Biol. 2010. PMID: 20377454

3

Error correction of next-generation sequencing data and reliable estimation of HIV quasispecies.

Zagordi O, Klein R, Däumer M, Beerenwinkel N. Zagordi O, et al. Among authors: beerenwinkel n. Nucleic Acids Res. 2010 Nov;38(21):7400-9. doi: 10.1093/nar/gkq655. Epub 2010 Jul 29. Nucleic Acids Res. 2010. PMID: 20671025 Free PMC article.

4

Analysis of HIV-1 expression level and sense of transcription by high-throughput sequencing of the infected cell.

Lefebvre G, Desfarges S, Uyttebroeck F, Muñoz M, Beerenwinkel N, Rougemont J, Telenti A, Ciuffi A. Lefebvre G, et al. Among authors: beerenwinkel n. J Virol. 2011 Jul;85(13):6205-11. doi: 10.1128/JVI.00252-11. Epub 2011 Apr 20. J Virol. 2011. PMID: 21507965 Free PMC article.

5

ShoRAH: estimating the genetic diversity of a mixed sample from next-generation sequencing data.

Zagordi O, Bhattacharya A, Eriksson N, Beerenwinkel N. Zagordi O, et al. Among authors: beerenwinkel n. BMC Bioinformatics. 2011 Apr 26;12:119. doi: 10.1186/1471-2105-12-119. BMC Bioinformatics. 2011. PMID: 21521499 Free PMC article.

6

Reliable detection of subclonal single-nucleotide variants in tumour cell populations.

Gerstung M, Beisel C, Rechsteiner M, Wild P, Schraml P, Moch H, Beerenwinkel N. Gerstung M, et al. Among authors: beerenwinkel n. Nat Commun. 2012 May 1;3:811. doi: 10.1038/ncomms1814. Nat Commun. 2012. PMID: 22549840 Free article.

7

Challenges and opportunities in estimating viral genetic diversity from next-generation sequencing data.

Beerenwinkel N, Günthard HF, Roth V, Metzner KJ. Beerenwinkel N, et al. Front Microbiol. 2012 Sep 11;3:329. doi: 10.3389/fmicb.2012.00329. eCollection 2012. Front Microbiol. 2012. PMID: 22973268 Free PMC article.

8

Read length versus depth of coverage for viral quasispecies reconstruction.

Zagordi O, Däumer M, Beisel C, Beerenwinkel N. Zagordi O, et al. Among authors: beerenwinkel n. PLoS One. 2012;7(10):e47046. doi: 10.1371/journal.pone.0047046. Epub 2012 Oct 3. PLoS One. 2012. PMID: 23056573 Free PMC article.

9

Probabilistic inference of viral quasispecies subject to recombination.

Töpfer A, Zagordi O, Prabhakaran S, Roth V, Halperin E, Beerenwinkel N. Töpfer A, et al. Among authors: beerenwinkel n. J Comput Biol. 2013 Feb;20(2):113-23. doi: 10.1089/cmb.2012.0232. J Comput Biol. 2013. PMID: 23383997 Free PMC article.

10

Sequencing approach to analyze the role of quasispecies for classical swine fever.

Töpfer A, Höper D, Blome S, Beer M, Beerenwinkel N, Ruggli N, Leifer I. Töpfer A, et al. Among authors: beerenwinkel n. Virology. 2013 Mar 30;438(1):14-9. doi: 10.1016/j.virol.2012.11.020. Epub 2013 Feb 13. Virology. 2013. PMID: 23415390 Free article.

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