Sumida T - Search Results

1

Gaining insight into the inhibition of glycoside hydrolase family 20 exo-β-N-acetylhexosaminidases using a structural approach.

Sumida T, Stubbs KA, Ito M, Yokoyama S. Sumida T, et al. Org Biomol Chem. 2012 Apr 7;10(13):2607-12. doi: 10.1039/c2ob06636j. Epub 2012 Feb 27. Org Biomol Chem. 2012. PMID: 22367352

2

Molecular cloning and characterization of a novel glucocerebrosidase of Paenibacillus sp. TS12.

Sumida T, Sueyoshi N, Ito M. Sumida T, et al. J Biochem. 2002 Aug;132(2):237-43. doi: 10.1093/oxfordjournals.jbchem.a003216. J Biochem. 2002. PMID: 12153721 Free article.

3

Utilization of ganglioside-degrading Paenibacillus sp. strain TS12 for production of glucosylceramide.

Sumida T, Sueyoshi N, Ito M. Sumida T, et al. Appl Environ Microbiol. 2002 Nov;68(11):5241-8. doi: 10.1128/AEM.68.11.5241-5248.2002. Appl Environ Microbiol. 2002. PMID: 12406710 Free PMC article.

4

Molecular cloning and crystal structural analysis of a novel beta-N-acetylhexosaminidase from Paenibacillus sp. TS12 capable of degrading glycosphingolipids.

Sumida T, Ishii R, Yanagisawa T, Yokoyama S, Ito M. Sumida T, et al. J Mol Biol. 2009 Sep 11;392(1):87-99. doi: 10.1016/j.jmb.2009.06.025. Epub 2009 Jun 12. J Mol Biol. 2009. PMID: 19524595

5

Modeling of tRNA-assisted mechanism of Arg activation based on a structure of Arg-tRNA synthetase, tRNA, and an ATP analog (ANP).

Konno M, Sumida T, Uchikawa E, Mori Y, Yanagisawa T, Sekine S, Yokoyama S. Konno M, et al. Among authors: sumida t. FEBS J. 2009 Sep;276(17):4763-79. doi: 10.1111/j.1742-4658.2009.07178.x. Epub 2009 Jul 27. FEBS J. 2009. PMID: 19656186 Free article.

6

A paralog of lysyl-tRNA synthetase aminoacylates a conserved lysine residue in translation elongation factor P.

Yanagisawa T, Sumida T, Ishii R, Takemoto C, Yokoyama S. Yanagisawa T, et al. Among authors: sumida t. Nat Struct Mol Biol. 2010 Sep;17(9):1136-43. doi: 10.1038/nsmb.1889. Epub 2010 Aug 22. Nat Struct Mol Biol. 2010. PMID: 20729861

7

Crystallization and preliminary X-ray crystallographic study of GenX, a lysyl-tRNA synthetase paralogue from Escherichia coli, in complex with translation elongation factor P.

Sumida T, Yanagisawa T, Ishii R, Yokoyama S. Sumida T, et al. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Sep 1;66(Pt 9):1115-8. doi: 10.1107/S1744309110032008. Epub 2010 Aug 28. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010. PMID: 20823541 Free PMC article.

8

Molecular cloning and catalytic mechanism of a novel glycosphingolipid-degrading beta-N-acetylgalactosaminidase from Paenibacillus sp. TS12.

Sumida T, Fujimoto K, Ito M. Sumida T, et al. J Biol Chem. 2011 Apr 22;286(16):14065-72. doi: 10.1074/jbc.M110.182592. Epub 2011 Feb 5. J Biol Chem. 2011. PMID: 21297160 Free PMC article.

9

A novel crystal form of pyrrolysyl-tRNA synthetase reveals the pre- and post-aminoacyl-tRNA synthesis conformational states of the adenylate and aminoacyl moieties and an asparagine residue in the catalytic site.

Yanagisawa T, Sumida T, Ishii R, Yokoyama S. Yanagisawa T, et al. Among authors: sumida t. Acta Crystallogr D Biol Crystallogr. 2013 Jan;69(Pt 1):5-15. doi: 10.1107/S0907444912039881. Epub 2012 Dec 20. Acta Crystallogr D Biol Crystallogr. 2013. PMID: 23275158

10

Conserved neutralizing epitope at globular head of hemagglutinin in H3N2 influenza viruses.

Iba Y, Fujii Y, Ohshima N, Sumida T, Kubota-Koketsu R, Ikeda M, Wakiyama M, Shirouzu M, Okada J, Okuno Y, Kurosawa Y, Yokoyama S. Iba Y, et al. Among authors: sumida t. J Virol. 2014 Jul;88(13):7130-44. doi: 10.1128/JVI.00420-14. Epub 2014 Apr 9. J Virol. 2014. PMID: 24719430 Free PMC article.

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