Donald BR - Search Results

1

Protein design using continuous rotamers.

Gainza P, Roberts KE, Donald BR. Gainza P, et al. Among authors: donald br. PLoS Comput Biol. 2012 Jan;8(1):e1002335. doi: 10.1371/journal.pcbi.1002335. Epub 2012 Jan 12. PLoS Comput Biol. 2012. PMID: 22279426 Free PMC article.

2

Improved Pruning algorithms and Divide-and-Conquer strategies for Dead-End Elimination, with application to protein design.

Georgiev I, Lilien RH, Donald BR. Georgiev I, et al. Among authors: donald br. Bioinformatics. 2006 Jul 15;22(14):e174-83. doi: 10.1093/bioinformatics/btl220. Bioinformatics. 2006. PMID: 16873469

3

Dead-end elimination with backbone flexibility.

Georgiev I, Donald BR. Georgiev I, et al. Among authors: donald br. Bioinformatics. 2007 Jul 1;23(13):i185-94. doi: 10.1093/bioinformatics/btm197. Bioinformatics. 2007. PMID: 17646295

4

The minimized dead-end elimination criterion and its application to protein redesign in a hybrid scoring and search algorithm for computing partition functions over molecular ensembles.

Georgiev I, Lilien RH, Donald BR. Georgiev I, et al. Among authors: donald br. J Comput Chem. 2008 Jul 30;29(10):1527-42. doi: 10.1002/jcc.20909. J Comput Chem. 2008. PMID: 18293294 Free PMC article.

5

Algorithm for backrub motions in protein design.

Georgiev I, Keedy D, Richardson JS, Richardson DC, Donald BR. Georgiev I, et al. Among authors: donald br. Bioinformatics. 2008 Jul 1;24(13):i196-204. doi: 10.1093/bioinformatics/btn169. Bioinformatics. 2008. PMID: 18586714 Free PMC article.

6

A Hausdorff-based NOE assignment algorithm using protein backbone determined from residual dipolar couplings and rotamer patterns.

Zeng J, Tripathy C, Zhou P, Donald BR. Zeng J, et al. Among authors: donald br. Comput Syst Bioinformatics Conf. 2008;7:169-81. Comput Syst Bioinformatics Conf. 2008. PMID: 19642278 Free article.

7

High-resolution protein structure determination starting with a global fold calculated from exact solutions to the RDC equations.

Zeng J, Boyles J, Tripathy C, Wang L, Yan A, Zhou P, Donald BR. Zeng J, et al. Among authors: donald br. J Biomol NMR. 2009 Nov;45(3):265-81. doi: 10.1007/s10858-009-9366-3. Epub 2009 Aug 27. J Biomol NMR. 2009. PMID: 19711185 Free PMC article.

8

Protein side-chain resonance assignment and NOE assignment using RDC-defined backbones without TOCSY data.

Zeng J, Zhou P, Donald BR. Zeng J, et al. Among authors: donald br. J Biomol NMR. 2011 Aug;50(4):371-95. doi: 10.1007/s10858-011-9522-4. Epub 2011 Jun 25. J Biomol NMR. 2011. PMID: 21706248 Free PMC article.

9

A Bayesian approach for determining protein side-chain rotamer conformations using unassigned NOE data.

Zeng J, Roberts KE, Zhou P, Donald BR. Zeng J, et al. Among authors: donald br. J Comput Biol. 2011 Nov;18(11):1661-79. doi: 10.1089/cmb.2011.0172. Epub 2011 Oct 4. J Comput Biol. 2011. PMID: 21970619 Free PMC article.

10

A geometric arrangement algorithm for structure determination of symmetric protein homo-oligomers from NOEs and RDCs.

Martin JW, Yan AK, Bailey-Kellogg C, Zhou P, Donald BR. Martin JW, et al. Among authors: donald br. J Comput Biol. 2011 Nov;18(11):1507-23. doi: 10.1089/cmb.2011.0173. Epub 2011 Oct 28. J Comput Biol. 2011. PMID: 22035328 Free PMC article.

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