Klamt S - Search Results

1

Minimal cut sets in a metabolic network are elementary modes in a dual network.

Ballerstein K, von Kamp A, Klamt S, Haus UU. Ballerstein K, et al. Among authors: klamt s. Bioinformatics. 2012 Feb 1;28(3):381-7. doi: 10.1093/bioinformatics/btr674. Epub 2011 Dec 21. Bioinformatics. 2012. PMID: 22190691

2

Genome-scale strain designs based on regulatory minimal cut sets.

Mahadevan R, von Kamp A, Klamt S. Mahadevan R, et al. Among authors: klamt s. Bioinformatics. 2015 Sep 1;31(17):2844-51. doi: 10.1093/bioinformatics/btv217. Epub 2015 Apr 25. Bioinformatics. 2015. PMID: 25913205

3

Speeding up the core algorithm for the dual calculation of minimal cut sets in large metabolic networks.

Klamt S, Mahadevan R, von Kamp A. Klamt S, et al. BMC Bioinformatics. 2020 Nov 9;21(1):510. doi: 10.1186/s12859-020-03837-3. BMC Bioinformatics. 2020. PMID: 33167871 Free PMC article.

4

Computing knock-out strategies in metabolic networks.

Haus UU, Klamt S, Stephen T. Haus UU, et al. Among authors: klamt s. J Comput Biol. 2008 Apr;15(3):259-68. doi: 10.1089/cmb.2007.0229. J Comput Biol. 2008. PMID: 18331197

5

Computing paths and cycles in biological interaction graphs.

Klamt S, von Kamp A. Klamt S, et al. BMC Bioinformatics. 2009 Jun 15;10:181. doi: 10.1186/1471-2105-10-181. BMC Bioinformatics. 2009. PMID: 19527491 Free PMC article.

6

An application programming interface for CellNetAnalyzer.

Klamt S, von Kamp A. Klamt S, et al. Biosystems. 2011 Aug;105(2):162-8. doi: 10.1016/j.biosystems.2011.02.002. Epub 2011 Feb 21. Biosystems. 2011. PMID: 21315797

7

Enumeration of smallest intervention strategies in genome-scale metabolic networks.

von Kamp A, Klamt S. von Kamp A, et al. Among authors: klamt s. PLoS Comput Biol. 2014 Jan;10(1):e1003378. doi: 10.1371/journal.pcbi.1003378. Epub 2014 Jan 2. PLoS Comput Biol. 2014. PMID: 24391481 Free PMC article.

8

An extended and generalized framework for the calculation of metabolic intervention strategies based on minimal cut sets.

Schneider P, von Kamp A, Klamt S. Schneider P, et al. Among authors: klamt s. PLoS Comput Biol. 2020 Jul 27;16(7):e1008110. doi: 10.1371/journal.pcbi.1008110. eCollection 2020 Jul. PLoS Comput Biol. 2020. PMID: 32716928 Free PMC article.

9

StrainDesign: a comprehensive Python package for computational design of metabolic networks.

Schneider P, Bekiaris PS, von Kamp A, Klamt S. Schneider P, et al. Among authors: klamt s. Bioinformatics. 2022 Oct 31;38(21):4981-4983. doi: 10.1093/bioinformatics/btac632. Bioinformatics. 2022. PMID: 36111857 Free PMC article.

10

Use of CellNetAnalyzer in biotechnology and metabolic engineering.

von Kamp A, Thiele S, Hädicke O, Klamt S. von Kamp A, et al. Among authors: klamt s. J Biotechnol. 2017 Nov 10;261:221-228. doi: 10.1016/j.jbiotec.2017.05.001. Epub 2017 May 10. J Biotechnol. 2017. PMID: 28499817 Free article. Review.

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