Das R - Search Results

1

An enumerative stepwise ansatz enables atomic-accuracy RNA loop modeling.

Sripakdeevong P, Kladwang W, Das R. Sripakdeevong P, et al. Among authors: das r. Proc Natl Acad Sci U S A. 2011 Dec 20;108(51):20573-8. doi: 10.1073/pnas.1106516108. Epub 2011 Dec 5. Proc Natl Acad Sci U S A. 2011. PMID: 22143768 Free PMC article.

2

Probing counterion modulated repulsion and attraction between nucleic acid duplexes in solution.

Bai Y, Das R, Millett IS, Herschlag D, Doniach S. Bai Y, et al. Among authors: das r. Proc Natl Acad Sci U S A. 2005 Jan 25;102(4):1035-40. doi: 10.1073/pnas.0404448102. Epub 2005 Jan 12. Proc Natl Acad Sci U S A. 2005. PMID: 15647360 Free PMC article.

3

Automated de novo prediction of native-like RNA tertiary structures.

Das R, Baker D. Das R, et al. Proc Natl Acad Sci U S A. 2007 Sep 11;104(37):14664-9. doi: 10.1073/pnas.0703836104. Epub 2007 Aug 28. Proc Natl Acad Sci U S A. 2007. PMID: 17726102 Free PMC article.

4

Structural inference of native and partially folded RNA by high-throughput contact mapping.

Das R, Kudaravalli M, Jonikas M, Laederach A, Fong R, Schwans JP, Baker D, Piccirilli JA, Altman RB, Herschlag D. Das R, et al. Proc Natl Acad Sci U S A. 2008 Mar 18;105(11):4144-9. doi: 10.1073/pnas.0709032105. Epub 2008 Mar 5. Proc Natl Acad Sci U S A. 2008. PMID: 18322008 Free PMC article.

5

Coarse-grained modeling of large RNA molecules with knowledge-based potentials and structural filters.

Jonikas MA, Radmer RJ, Laederach A, Das R, Pearlman S, Herschlag D, Altman RB. Jonikas MA, et al. Among authors: das r. RNA. 2009 Feb;15(2):189-99. doi: 10.1261/rna.1270809. RNA. 2009. PMID: 19144906 Free PMC article.

6

Simultaneous prediction of protein folding and docking at high resolution.

Das R, André I, Shen Y, Wu Y, Lemak A, Bansal S, Arrowsmith CH, Szyperski T, Baker D. Das R, et al. Proc Natl Acad Sci U S A. 2009 Nov 10;106(45):18978-83. doi: 10.1073/pnas.0904407106. Epub 2009 Oct 28. Proc Natl Acad Sci U S A. 2009. PMID: 19864631 Free PMC article.

7

Atomic accuracy in predicting and designing noncanonical RNA structure.

Das R, Karanicolas J, Baker D. Das R, et al. Nat Methods. 2010 Apr;7(4):291-4. doi: 10.1038/nmeth.1433. Epub 2010 Feb 28. Nat Methods. 2010. PMID: 20190761 Free PMC article.

8

A mutate-and-map strategy for inferring base pairs in structured nucleic acids: proof of concept on a DNA/RNA helix.

Kladwang W, Das R. Kladwang W, et al. Among authors: das r. Biochemistry. 2010 Sep 7;49(35):7414-6. doi: 10.1021/bi101123g. Biochemistry. 2010. PMID: 20677780

9

A mutate-and-map strategy accurately infers the base pairs of a 35-nucleotide model RNA.

Kladwang W, Cordero P, Das R. Kladwang W, et al. Among authors: das r. RNA. 2011 Mar;17(3):522-34. doi: 10.1261/rna.2516311. Epub 2011 Jan 14. RNA. 2011. PMID: 21239468 Free PMC article.

10

HiTRACE: high-throughput robust analysis for capillary electrophoresis.

Yoon S, Kim J, Hum J, Kim H, Park S, Kladwang W, Das R. Yoon S, et al. Among authors: das r. Bioinformatics. 2011 Jul 1;27(13):1798-805. doi: 10.1093/bioinformatics/btr277. Epub 2011 May 10. Bioinformatics. 2011. PMID: 21561922

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