Planet PJ - Search Results

1

Random Addition Concatenation Analysis: a novel approach to the exploration of phylogenomic signal reveals strong agreement between core and shell genomic partitions in the cyanobacteria.

Narechania A, Baker RH, Sit R, Kolokotronis SO, DeSalle R, Planet PJ. Narechania A, et al. Among authors: planet pj. Genome Biol Evol. 2012;4(1):30-43. doi: 10.1093/gbe/evr121. Epub 2011 Nov 16. Genome Biol Evol. 2012. PMID: 22094860 Free PMC article.

2

Phylogeny of genes for secretion NTPases: identification of the widespread tadA subfamily and development of a diagnostic key for gene classification.

Planet PJ, Kachlany SC, DeSalle R, Figurski DH. Planet PJ, et al. Proc Natl Acad Sci U S A. 2001 Feb 27;98(5):2503-8. doi: 10.1073/pnas.051436598. Proc Natl Acad Sci U S A. 2001. PMID: 11226268 Free PMC article.

3

Systematic analysis of DNA microarray data: ordering and interpreting patterns of gene expression.

Planet PJ, DeSalle R, Siddall M, Bael T, Sarkar IN, Stanley SE. Planet PJ, et al. Genome Res. 2001 Jul;11(7):1149-55. doi: 10.1101/gr.187601. Genome Res. 2001. PMID: 11435396 Free article. Review. No abstract available.

4

An automated phylogenetic key for classifying homeoboxes.

Sarkar IN, Thornton JW, Planet PJ, Figurski DH, Schierwater B, DeSalle R. Sarkar IN, et al. Among authors: planet pj. Mol Phylogenet Evol. 2002 Sep;24(3):388-99. doi: 10.1016/s1055-7903(02)00259-2. Mol Phylogenet Evol. 2002. PMID: 12220982

5

Characteristic attributes in cancer microarrays.

Sarkar IN, Planet PJ, Bael TE, Stanley SE, Siddall M, DeSalle R, Figurski DH. Sarkar IN, et al. Among authors: planet pj. J Biomed Inform. 2002 Apr;35(2):111-22. doi: 10.1016/s1532-0464(02)00504-x. J Biomed Inform. 2002. PMID: 12474425 Free article.

6

The Widespread Colonization Island of Actinobacillus actinomycetemcomitans.

Planet PJ, Kachlany SC, Fine DH, DeSalle R, Figurski DH. Planet PJ, et al. Nat Genet. 2003 Jun;34(2):193-8. doi: 10.1038/ng1154. Nat Genet. 2003. PMID: 12717435

7

ORFcurator: molecular curation of genes and gene clusters in prokaryotic organisms.

Rosenfeld JA, Sarkar IN, Planet PJ, Figurski DH, DeSalle R. Rosenfeld JA, et al. Among authors: planet pj. Bioinformatics. 2004 Dec 12;20(18):3462-5. doi: 10.1093/bioinformatics/bth427. Epub 2004 Jul 22. Bioinformatics. 2004. PMID: 15271781

8

Reciprocal illumination in the gene content tree of life.

Lienau EK, DeSalle R, Rosenfeld JA, Planet PJ. Lienau EK, et al. Among authors: planet pj. Syst Biol. 2006 Jun;55(3):441-53. doi: 10.1080/10635150600697416. Syst Biol. 2006. PMID: 16861208

9

Complete genome sequence of Aggregatibacter (Haemophilus) aphrophilus NJ8700.

Di Bonaventura MP, DeSalle R, Pop M, Nagarajan N, Figurski DH, Fine DH, Kaplan JB, Planet PJ. Di Bonaventura MP, et al. Among authors: planet pj. J Bacteriol. 2009 Jul;191(14):4693-4. doi: 10.1128/JB.00447-09. Epub 2009 May 15. J Bacteriol. 2009. PMID: 19447908 Free PMC article.

10

A whole-genome phylogeny of the family Pasteurellaceae.

Bonaventura MP, Lee EK, Desalle R, Planet PJ. Bonaventura MP, et al. Among authors: planet pj. Mol Phylogenet Evol. 2010 Mar;54(3):950-6. doi: 10.1016/j.ympev.2009.08.010. Epub 2009 Aug 15. Mol Phylogenet Evol. 2010. PMID: 19686857

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