Oliveira JL - Search Results

1

Species-specific codon context rules unveil non-neutrality effects of synonymous mutations.

Moura GR, Pinheiro M, Freitas A, Oliveira JL, Frommlet JC, Carreto L, Soares AR, Bezerra AR, Santos MA. Moura GR, et al. Among authors: oliveira jl. PLoS One. 2011;6(10):e26817. doi: 10.1371/journal.pone.0026817. Epub 2011 Oct 26. PLoS One. 2011. PMID: 22046369 Free PMC article.

2

Comparative context analysis of codon pairs on an ORFeome scale.

Moura G, Pinheiro M, Silva R, Miranda I, Afreixo V, Dias G, Freitas A, Oliveira JL, Santos MA. Moura G, et al. Among authors: oliveira jl. Genome Biol. 2005;6(3):R28. doi: 10.1186/gb-2005-6-3-r28. Epub 2005 Feb 15. Genome Biol. 2005. PMID: 15774029 Free PMC article.

3

Statistical, computational and visualization methodologies to unveil gene primary structure features.

Pinheiro M, Afreixo V, Moura G, Freitas A, Santos MA, Oliveira JL. Pinheiro M, et al. Among authors: oliveira jl. Methods Inf Med. 2006;45(2):163-8. Methods Inf Med. 2006. PMID: 16538282

4

Large scale comparative codon-pair context analysis unveils general rules that fine-tune evolution of mRNA primary structure.

Moura G, Pinheiro M, Arrais J, Gomes AC, Carreto L, Freitas A, Oliveira JL, Santos MA. Moura G, et al. Among authors: oliveira jl. PLoS One. 2007 Sep 5;2(9):e847. doi: 10.1371/journal.pone.0000847. PLoS One. 2007. PMID: 17786218 Free PMC article.

5

Computational and statistical methodologies for ORFeome primary structure analysis.

Moura G, Pinheiro M, Freitas AV, Oliveira JL, Santos MA. Moura G, et al. Among authors: oliveira jl. Methods Mol Biol. 2007;395:449-62. doi: 10.1007/978-1-59745-514-5_28. Methods Mol Biol. 2007. PMID: 17993691

6

Codon-triplet context unveils unique features of the Candida albicans protein coding genome.

Moura GR, Lousado JP, Pinheiro M, Carreto L, Silva RM, Oliveira JL, Santos MA. Moura GR, et al. Among authors: oliveira jl. BMC Genomics. 2007 Nov 29;8:444. doi: 10.1186/1471-2164-8-444. BMC Genomics. 2007. PMID: 18047667 Free PMC article.

7

Parallel DNA pyrosequencing unveils new zebrafish microRNAs.

Soares AR, Pereira PM, Santos B, Egas C, Gomes AC, Arrais J, Oliveira JL, Moura GR, Santos MA. Soares AR, et al. Among authors: oliveira jl. BMC Genomics. 2009 Apr 27;10:195. doi: 10.1186/1471-2164-10-195. BMC Genomics. 2009. PMID: 19397817 Free PMC article.

8

EuGene: maximizing synthetic gene design for heterologous expression.

Gaspar P, Oliveira JL, Frommlet J, Santos MA, Moura G. Gaspar P, et al. Among authors: oliveira jl. Bioinformatics. 2012 Oct 15;28(20):2683-4. doi: 10.1093/bioinformatics/bts465. Epub 2012 Jul 30. Bioinformatics. 2012. PMID: 22847936

9

An integrative approach for codon repeats evolutionary analyses.

Lousado JP, Oliveira JL, Moura G, Santos MA. Lousado JP, et al. Among authors: oliveira jl. Int J Data Min Bioinform. 2012;6(4):369-81. doi: 10.1504/ijdmb.2012.049294. Int J Data Min Bioinform. 2012. PMID: 23155768

10

mRNA secondary structure optimization using a correlated stem-loop prediction.

Gaspar P, Moura G, Santos MA, Oliveira JL. Gaspar P, et al. Among authors: oliveira jl. Nucleic Acids Res. 2013 Apr 1;41(6):e73. doi: 10.1093/nar/gks1473. Epub 2013 Jan 15. Nucleic Acids Res. 2013. PMID: 23325845 Free PMC article.

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