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A whole-genome single nucleotide polymorphism-based approach to trace and identify outbreaks linked to a common Salmonella enterica subsp. enterica serovar Montevideo pulsed-field gel electrophoresis type.
Bakker HC, Switt AI, Cummings CA, Hoelzer K, Degoricija L, Rodriguez-Rivera LD, Wright EM, Fang R, Davis M, Root T, Schoonmaker-Bopp D, Musser KA, Villamil E, Waechter H, Kornstein L, Furtado MR, Wiedmann M. Bakker HC, et al. Among authors: cummings ca. Appl Environ Microbiol. 2011 Dec;77(24):8648-55. doi: 10.1128/AEM.06538-11. Epub 2011 Oct 14. Appl Environ Microbiol. 2011. PMID: 22003026 Free PMC article.
Genome sequencing reveals diversification of virulence factor content and possible host adaptation in distinct subpopulations of Salmonella enterica.
den Bakker HC, Moreno Switt AI, Govoni G, Cummings CA, Ranieri ML, Degoricija L, Hoelzer K, Rodriguez-Rivera LD, Brown S, Bolchacova E, Furtado MR, Wiedmann M. den Bakker HC, et al. Among authors: cummings ca. BMC Genomics. 2011 Aug 22;12:425. doi: 10.1186/1471-2164-12-425. BMC Genomics. 2011. PMID: 21859443 Free PMC article.
Identification and characterization of novel Salmonella mobile elements involved in the dissemination of genes linked to virulence and transmission.
Moreno Switt AI, den Bakker HC, Cummings CA, Rodriguez-Rivera LD, Govoni G, Raneiri ML, Degoricija L, Brown S, Hoelzer K, Peters JE, Bolchacova E, Furtado MR, Wiedmann M. Moreno Switt AI, et al. Among authors: cummings ca. PLoS One. 2012;7(7):e41247. doi: 10.1371/journal.pone.0041247. Epub 2012 Jul 20. PLoS One. 2012. PMID: 22911766 Free PMC article.
Accurate, rapid and high-throughput detection of strain-specific polymorphisms in Bacillus anthracis and Yersinia pestis by next-generation sequencing.
Cummings CA, Bormann Chung CA, Fang R, Barker M, Brzoska P, Williamson PC, Beaudry J, Matthews M, Schupp J, Wagner DM, Birdsell D, Vogler AJ, Furtado MR, Keim P, Budowle B. Cummings CA, et al. Investig Genet. 2010 Sep 1;1(1):5. doi: 10.1186/2041-2223-1-5. Investig Genet. 2010. PMID: 21092340 Free PMC article.
Using Whole Genome Analysis to Examine Recombination across Diverse Sequence Types of Staphylococcus aureus.
Driebe EM, Sahl JW, Roe C, Bowers JR, Schupp JM, Gillece JD, Kelley E, Price LB, Pearson TR, Hepp CM, Brzoska PM, Cummings CA, Furtado MR, Andersen PS, Stegger M, Engelthaler DM, Keim PS. Driebe EM, et al. Among authors: cummings ca. PLoS One. 2015 Jul 10;10(7):e0130955. doi: 10.1371/journal.pone.0130955. eCollection 2015. PLoS One. 2015. PMID: 26161978 Free PMC article.
Comparative analysis of genome sequences covering the seven cronobacter species.
Joseph S, Desai P, Ji Y, Cummings CA, Shih R, Degoricija L, Rico A, Brzoska P, Hamby SE, Masood N, Hariri S, Sonbol H, Chuzhanova N, McClelland M, Furtado MR, Forsythe SJ. Joseph S, et al. Among authors: cummings ca. PLoS One. 2012;7(11):e49455. doi: 10.1371/journal.pone.0049455. Epub 2012 Nov 16. PLoS One. 2012. PMID: 23166675 Free PMC article.
Escherichia coli serotype O55:H7 diversity supports parallel acquisition of bacteriophage at Shiga toxin phage insertion sites during evolution of the O157:H7 lineage.
Kyle JL, Cummings CA, Parker CT, Quiñones B, Vatta P, Newton E, Huynh S, Swimley M, Degoricija L, Barker M, Fontanoz S, Nguyen K, Patel R, Fang R, Tebbs R, Petrauskene O, Furtado M, Mandrell RE. Kyle JL, et al. Among authors: cummings ca. J Bacteriol. 2012 Apr;194(8):1885-96. doi: 10.1128/JB.00120-12. Epub 2012 Feb 10. J Bacteriol. 2012. PMID: 22328665 Free PMC article.
64 results