Rigoutsos I - Search Results

1

Evaluation of methods for de novo genome assembly from high-throughput sequencing reads reveals dependencies that affect the quality of the results.

Haiminen N, Kuhn DN, Parida L, Rigoutsos I. Haiminen N, et al. Among authors: rigoutsos i. PLoS One. 2011;6(9):e24182. doi: 10.1371/journal.pone.0024182. Epub 2011 Sep 7. PLoS One. 2011. PMID: 21915294 Free PMC article.

2

Dictionary building via unsupervised hierarchical motif discovery in the sequence space of natural proteins.

Rigoutsos I, Floratos A, Ouzounis C, Gao Y, Parida L. Rigoutsos I, et al. Proteins. 1999 Nov 1;37(2):264-77. doi: 10.1002/(sici)1097-0134(19991101)37:2<264::aid-prot11>3.0.co;2-c. Proteins. 1999. PMID: 10584071

3

Building dictionaries of 1D and 3D motifs by mining the Unaligned 1D sequences of 17 archaeal and bacterial genomes.

Rigoutsos I, Gao Y, Floratos A, Parida L. Rigoutsos I, et al. Proc Int Conf Intell Syst Mol Biol. 1999:223-33. Proc Int Conf Intell Syst Mol Biol. 1999. PMID: 10786305

4

The emergence of pattern discovery techniques in computational biology.

Rigoutsos I, Floratos A, Parida L, Gao Y, Platt D. Rigoutsos I, et al. Metab Eng. 2000 Jul;2(3):159-77. doi: 10.1006/mben.2000.0151. Metab Eng. 2000. PMID: 11056059 Review.

5

MUSCA: An Algorithm for Constrained Alignment of Multiple Data Sequences.

Parida L, Floratos A, Rigoutsos I I. Parida L, et al. Among authors: rigoutsos i i. Genome Inform Ser Workshop Genome Inform. 1998;9:112-119. Genome Inform Ser Workshop Genome Inform. 1998. PMID: 11072327

6

Dictionary-driven protein annotation.

Rigoutsos I, Huynh T, Floratos A, Parida L, Platt D. Rigoutsos I, et al. Nucleic Acids Res. 2002 Sep 1;30(17):3901-16. doi: 10.1093/nar/gkf464. Nucleic Acids Res. 2002. PMID: 12202776 Free PMC article.

7

In silico pattern-based analysis of the human cytomegalovirus genome.

Rigoutsos I, Novotny J, Huynh T, Chin-Bow ST, Parida L, Platt D, Coleman D, Shenk T. Rigoutsos I, et al. J Virol. 2003 Apr;77(7):4326-44. doi: 10.1128/jvi.77.7.4326-4344.2003. J Virol. 2003. PMID: 12634390 Free PMC article.

8

The web server of IBM's Bioinformatics and Pattern Discovery group.

Huynh T, Rigoutsos I, Parida L, Platt D, Shibuya T. Huynh T, et al. Among authors: rigoutsos i. Nucleic Acids Res. 2003 Jul 1;31(13):3645-50. doi: 10.1093/nar/gkg621. Nucleic Acids Res. 2003. PMID: 12824385 Free PMC article.

9

Short blocks from the noncoding parts of the human genome have instances within nearly all known genes and relate to biological processes.

Rigoutsos I, Huynh T, Miranda K, Tsirigos A, McHardy A, Platt D. Rigoutsos I, et al. Proc Natl Acad Sci U S A. 2006 Apr 25;103(17):6605-10. doi: 10.1073/pnas.0601688103. Epub 2006 Apr 24. Proc Natl Acad Sci U S A. 2006. PMID: 16636294 Free PMC article.

10

A pattern-based method for the identification of MicroRNA binding sites and their corresponding heteroduplexes.

Miranda KC, Huynh T, Tay Y, Ang YS, Tam WL, Thomson AM, Lim B, Rigoutsos I. Miranda KC, et al. Among authors: rigoutsos i. Cell. 2006 Sep 22;126(6):1203-17. doi: 10.1016/j.cell.2006.07.031. Cell. 2006. PMID: 16990141 Free article.

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