Zhu K - Search Results

1

Zhao S, Zhu K, Li J, Friesner RA. Zhao S, et al. Among authors: zhu k. Proteins. 2011 Oct;79(10):2920-35. doi: 10.1002/prot.23129. Epub 2011 Aug 23. Proteins. 2011. PMID: 21905115 Free PMC article.

2

Long loop prediction using the protein local optimization program.

Zhu K, Pincus DL, Zhao S, Friesner RA. Zhu K, et al. Proteins. 2006 Nov 1;65(2):438-52. doi: 10.1002/prot.21040. Proteins. 2006. PMID: 16927380

3

Assignment of polar states for protein amino acid residues using an interaction cluster decomposition algorithm and its application to high resolution protein structure modeling.

Li X, Jacobson MP, Zhu K, Zhao S, Friesner RA. Li X, et al. Among authors: zhu k. Proteins. 2007 Mar 1;66(4):824-37. doi: 10.1002/prot.21125. Proteins. 2007. PMID: 17154422

4

Toward better refinement of comparative models: predicting loops in inexact environments.

Sellers BD, Zhu K, Zhao S, Friesner RA, Jacobson MP. Sellers BD, et al. Among authors: zhu k. Proteins. 2008 Aug 15;72(3):959-71. doi: 10.1002/prot.21990. Proteins. 2008. PMID: 18300241 Free PMC article.

5

Successful prediction of the intra- and extracellular loops of four G-protein-coupled receptors.

Goldfeld DA, Zhu K, Beuming T, Friesner RA. Goldfeld DA, et al. Among authors: zhu k. Proc Natl Acad Sci U S A. 2011 May 17;108(20):8275-80. doi: 10.1073/pnas.1016951108. Epub 2011 May 2. Proc Natl Acad Sci U S A. 2011. PMID: 21536915 Free PMC article.

6

The VSGB 2.0 model: a next generation energy model for high resolution protein structure modeling.

Li J, Abel R, Zhu K, Cao Y, Zhao S, Friesner RA. Li J, et al. Among authors: zhu k. Proteins. 2011 Oct;79(10):2794-812. doi: 10.1002/prot.23106. Epub 2011 Aug 22. Proteins. 2011. PMID: 21905107 Free PMC article.

7

Loop prediction for a GPCR homology model: algorithms and results.

Goldfeld DA, Zhu K, Beuming T, Friesner RA. Goldfeld DA, et al. Among authors: zhu k. Proteins. 2013 Feb;81(2):214-28. doi: 10.1002/prot.24178. Epub 2012 Sep 29. Proteins. 2013. PMID: 22965891

8

Antibody structure determination using a combination of homology modeling, energy-based refinement, and loop prediction.

Zhu K, Day T, Warshaviak D, Murrett C, Friesner R, Pearlman D. Zhu K, et al. Proteins. 2014 Aug;82(8):1646-55. doi: 10.1002/prot.24551. Epub 2014 Apr 16. Proteins. 2014. PMID: 24619874 Free PMC article.

9

Prediction of Long Loops with Embedded Secondary Structure using the Protein Local Optimization Program.

Miller EB, Murrett CS, Zhu K, Zhao S, Goldfeld DA, Bylund JH, Friesner RA. Miller EB, et al. Among authors: zhu k. J Chem Theory Comput. 2013 Mar 12;9(3):1846-4864. doi: 10.1021/ct301083q. J Chem Theory Comput. 2013. PMID: 23814507 Free PMC article.

10

Improved Methods for Side Chain and Loop Predictions via the Protein Local Optimization Program: Variable Dielectric Model for Implicitly Improving the Treatment of Polarization Effects.

Zhu K, Shirts MR, Friesner RA. Zhu K, et al. J Chem Theory Comput. 2007 Nov;3(6):2108-19. doi: 10.1021/ct700166f. J Chem Theory Comput. 2007. PMID: 26636204

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