Joshi A - Search Results

1

Enrichment and aggregation of topological motifs are independent organizational principles of integrated interaction networks.

Michoel T, Joshi A, Nachtergaele B, Van de Peer Y. Michoel T, et al. Among authors: joshi a. Mol Biosyst. 2011 Oct;7(10):2769-78. doi: 10.1039/c1mb05241a. Epub 2011 Aug 23. Mol Biosyst. 2011. PMID: 21860879

2

Reverse-engineering transcriptional modules from gene expression data.

Michoel T, De Smet R, Joshi A, Marchal K, Van de Peer Y. Michoel T, et al. Among authors: joshi a. Ann N Y Acad Sci. 2009 Mar;1158:36-43. doi: 10.1111/j.1749-6632.2008.03943.x. Ann N Y Acad Sci. 2009. PMID: 19348630

3

Comparative analysis of module-based versus direct methods for reverse-engineering transcriptional regulatory networks.

Michoel T, De Smet R, Joshi A, Van de Peer Y, Marchal K. Michoel T, et al. Among authors: joshi a. BMC Syst Biol. 2009 May 7;3:49. doi: 10.1186/1752-0509-3-49. BMC Syst Biol. 2009. PMID: 19422680 Free PMC article.

4

Transcription regulatory networks in Caenorhabditis elegans inferred through reverse-engineering of gene expression profiles constitute biological hypotheses for metazoan development.

Vermeirssen V, Joshi A, Michoel T, Bonnet E, Casneuf T, Van de Peer Y. Vermeirssen V, et al. Among authors: joshi a. Mol Biosyst. 2009 Dec;5(12):1817-30. doi: 10.1039/B908108a. Epub 2009 Jul 17. Mol Biosyst. 2009. PMID: 19763340

5

Characterizing regulatory path motifs in integrated networks using perturbational data.

Joshi A, Van Parys T, Van de Peer Y, Michoel T. Joshi A, et al. Genome Biol. 2010;11(3):R32. doi: 10.1186/gb-2010-11-3-r32. Epub 2010 Mar 11. Genome Biol. 2010. PMID: 20230615 Free PMC article.

6

Validating module network learning algorithms using simulated data.

Michoel T, Maere S, Bonnet E, Joshi A, Saeys Y, Van den Bulcke T, Van Leemput K, van Remortel P, Kuiper M, Marchal K, Van de Peer Y. Michoel T, et al. Among authors: joshi a. BMC Bioinformatics. 2007 May 3;8 Suppl 2(Suppl 2):S5. doi: 10.1186/1471-2105-8-S2-S5. BMC Bioinformatics. 2007. PMID: 17493254 Free PMC article.

7

Post-transcriptional regulatory networks play a key role in noise reduction that is conserved from micro-organisms to mammals.

Joshi A, Beck Y, Michoel T. Joshi A, et al. FEBS J. 2012 Sep;279(18):3501-12. doi: 10.1111/j.1742-4658.2012.08571.x. Epub 2012 Apr 10. FEBS J. 2012. PMID: 22436024 Free article.

8

Causal Transcription Regulatory Network Inference Using Enhancer Activity as a Causal Anchor.

Vipin D, Wang L, Devailly G, Michoel T, Joshi A. Vipin D, et al. Among authors: joshi a. Int J Mol Sci. 2018 Nov 15;19(11):3609. doi: 10.3390/ijms19113609. Int J Mol Sci. 2018. PMID: 30445760 Free PMC article.

9

Structural and functional organization of RNA regulons in the post-transcriptional regulatory network of yeast.

Joshi A, Van de Peer Y, Michoel T. Joshi A, et al. Nucleic Acids Res. 2011 Nov;39(21):9108-17. doi: 10.1093/nar/gkr661. Epub 2011 Aug 12. Nucleic Acids Res. 2011. PMID: 21840901 Free PMC article.

10

Analysis of a Gibbs sampler method for model-based clustering of gene expression data.

Joshi A, Van de Peer Y, Michoel T. Joshi A, et al. Bioinformatics. 2008 Jan 15;24(2):176-83. doi: 10.1093/bioinformatics/btm562. Epub 2007 Nov 22. Bioinformatics. 2008. PMID: 18033794

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