Martin DP - Search Results

1

Analysing recombination in nucleotide sequences.

Martin DP, Lemey P, Posada D. Martin DP, et al. Mol Ecol Resour. 2011 Nov;11(6):943-55. doi: 10.1111/j.1755-0998.2011.03026.x. Epub 2011 May 19. Mol Ecol Resour. 2011. PMID: 21592314 Review.

2

RDP: detection of recombination amongst aligned sequences.

Martin D, Rybicki E. Martin D, et al. Bioinformatics. 2000 Jun;16(6):562-3. doi: 10.1093/bioinformatics/16.6.562. Bioinformatics. 2000. PMID: 10980155

3

RDP2: recombination detection and analysis from sequence alignments.

Martin DP, Williamson C, Posada D. Martin DP, et al. Bioinformatics. 2005 Jan 15;21(2):260-2. doi: 10.1093/bioinformatics/bth490. Epub 2004 Sep 17. Bioinformatics. 2005. PMID: 15377507

4

Widespread recombination in published animal mtDNA sequences.

Tsaousis AD, Martin DP, Ladoukakis ED, Posada D, Zouros E. Tsaousis AD, et al. Among authors: martin dp. Mol Biol Evol. 2005 Apr;22(4):925-33. doi: 10.1093/molbev/msi084. Epub 2005 Jan 12. Mol Biol Evol. 2005. PMID: 15647518

5

A modified bootscan algorithm for automated identification of recombinant sequences and recombination breakpoints.

Martin DP, Posada D, Crandall KA, Williamson C. Martin DP, et al. AIDS Res Hum Retroviruses. 2005 Jan;21(1):98-102. doi: 10.1089/aid.2005.21.98. AIDS Res Hum Retroviruses. 2005. PMID: 15665649

6

The evolutionary value of recombination is constrained by genome modularity.

Martin DP, van der Walt E, Posada D, Rybicki EP. Martin DP, et al. PLoS Genet. 2005 Oct;1(4):e51. doi: 10.1371/journal.pgen.0010051. PLoS Genet. 2005. PMID: 16244707 Free PMC article.

7

Restoration of native folding of single-stranded DNA sequences through reverse mutations: an indication of a new epigenetic mechanism.

Shepherd DN, Martin DP, Varsani A, Thomson JA, Rybicki EP, Klump HH. Shepherd DN, et al. Among authors: martin dp. Arch Biochem Biophys. 2006 Sep 1;453(1):108-22. doi: 10.1016/j.abb.2005.12.009. Epub 2006 Jan 4. Arch Biochem Biophys. 2006. PMID: 16427599

8

Evidence of ancient papillomavirus recombination.

Varsani A, van der Walt E, Heath L, Rybicki EP, Williamson AL, Martin DP. Varsani A, et al. Among authors: martin dp. J Gen Virol. 2006 Sep;87(Pt 9):2527-2531. doi: 10.1099/vir.0.81917-0. J Gen Virol. 2006. PMID: 16894190

9

Robust inference of positive selection from recombining coding sequences.

Scheffler K, Martin DP, Seoighe C. Scheffler K, et al. Among authors: martin dp. Bioinformatics. 2006 Oct 15;22(20):2493-9. doi: 10.1093/bioinformatics/btl427. Epub 2006 Aug 7. Bioinformatics. 2006. PMID: 16895925

10

Recombination patterns in aphthoviruses mirror those found in other picornaviruses.

Heath L, van der Walt E, Varsani A, Martin DP. Heath L, et al. Among authors: martin dp. J Virol. 2006 Dec;80(23):11827-32. doi: 10.1128/JVI.01100-06. Epub 2006 Sep 13. J Virol. 2006. PMID: 16971423 Free PMC article.

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