Feng J - Search Results

1

Inference of isoforms from short sequence reads.

Feng J, Li W, Jiang T. Feng J, et al. J Comput Biol. 2011 Mar;18(3):305-21. doi: 10.1089/cmb.2010.0243. J Comput Biol. 2011. PMID: 21385036 Free PMC article.

2

IsoLasso: a LASSO regression approach to RNA-Seq based transcriptome assembly.

Li W, Feng J, Jiang T. Li W, et al. Among authors: feng j. J Comput Biol. 2011 Nov;18(11):1693-707. doi: 10.1089/cmb.2011.0171. Epub 2011 Sep 27. J Comput Biol. 2011. PMID: 21951053 Free PMC article.

3

A max-flow based approach to the identification of protein complexes using protein interaction and microarray data.

Feng J, Jiang R, Jiang T. Feng J, et al. Comput Syst Bioinformatics Conf. 2008;7:51-62. Comput Syst Bioinformatics Conf. 2008. PMID: 19642268 Free article.

4

A max-flow-based approach to the identification of protein complexes using protein interaction and microarray data.

Feng J, Jiang R, Jiang T. Feng J, et al. IEEE/ACM Trans Comput Biol Bioinform. 2011 May-Jun;8(3):621-34. doi: 10.1109/TCBB.2010.78. IEEE/ACM Trans Comput Biol Bioinform. 2011. PMID: 20733237

5

Quantifying functional impact of non-coding variants with multi-task Bayesian neural network.

Xu C, Liu Q, Zhou J, Xie M, Feng J, Jiang T. Xu C, et al. Among authors: feng j. Bioinformatics. 2020 Mar 1;36(5):1397-1404. doi: 10.1093/bioinformatics/btz767. Bioinformatics. 2020. PMID: 31693090

6

GFOLD: a generalized fold change for ranking differentially expressed genes from RNA-seq data.

Feng J, Meyer CA, Wang Q, Liu JS, Shirley Liu X, Zhang Y. Feng J, et al. Bioinformatics. 2012 Nov 1;28(21):2782-8. doi: 10.1093/bioinformatics/bts515. Epub 2012 Aug 24. Bioinformatics. 2012. PMID: 22923299

7

Identifying ChIP-seq enrichment using MACS.

Feng J, Liu T, Qin B, Zhang Y, Liu XS. Feng J, et al. Nat Protoc. 2012 Sep;7(9):1728-40. doi: 10.1038/nprot.2012.101. Epub 2012 Aug 30. Nat Protoc. 2012. PMID: 22936215 Free PMC article.

8

DiNuP: a systematic approach to identify regions of differential nucleosome positioning.

Fu K, Tang Q, Feng J, Liu XS, Zhang Y. Fu K, et al. Among authors: feng j. Bioinformatics. 2012 Aug 1;28(15):1965-71. doi: 10.1093/bioinformatics/bts329. Epub 2012 Jun 4. Bioinformatics. 2012. PMID: 22668788 Free PMC article.

9

JARID1B is a luminal lineage-driving oncogene in breast cancer.

Yamamoto S, Wu Z, Russnes HG, Takagi S, Peluffo G, Vaske C, Zhao X, Moen Vollan HK, Maruyama R, Ekram MB, Sun H, Kim JH, Carver K, Zucca M, Feng J, Almendro V, Bessarabova M, Rueda OM, Nikolsky Y, Caldas C, Liu XS, Polyak K. Yamamoto S, et al. Among authors: feng j. Cancer Cell. 2014 Jun 16;25(6):762-77. doi: 10.1016/j.ccr.2014.04.024. Cancer Cell. 2014. PMID: 24937458 Free PMC article.

10

Using MACS to identify peaks from ChIP-Seq data.

Feng J, Liu T, Zhang Y. Feng J, et al. Curr Protoc Bioinformatics. 2011 Jun;Chapter 2:2.14.1-2.14.14. doi: 10.1002/0471250953.bi0214s34. Curr Protoc Bioinformatics. 2011. PMID: 21633945 Free PMC article.

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