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A novel bioinformatics pipeline for identification and characterization of fusion transcripts in breast cancer and normal cell lines.
Asmann YW, Hossain A, Necela BM, Middha S, Kalari KR, Sun Z, Chai HS, Williamson DW, Radisky D, Schroth GP, Kocher JP, Perez EA, Thompson EA. Asmann YW, et al. Among authors: schroth gp. Nucleic Acids Res. 2011 Aug;39(15):e100. doi: 10.1093/nar/gkr362. Epub 2011 May 27. Nucleic Acids Res. 2011. PMID: 21622959 Free PMC article.
Detection of redundant fusion transcripts as biomarkers or disease-specific therapeutic targets in breast cancer.
Asmann YW, Necela BM, Kalari KR, Hossain A, Baker TR, Carr JM, Davis C, Getz JE, Hostetter G, Li X, McLaughlin SA, Radisky DC, Schroth GP, Cunliffe HE, Perez EA, Thompson EA. Asmann YW, et al. Among authors: schroth gp. Cancer Res. 2012 Apr 15;72(8):1921-8. doi: 10.1158/0008-5472.CAN-11-3142. Epub 2012 Apr 10. Cancer Res. 2012. PMID: 22496456
Base-pair resolution DNA methylation sequencing reveals profoundly divergent epigenetic landscapes in acute myeloid leukemia.
Akalin A, Garrett-Bakelman FE, Kormaksson M, Busuttil J, Zhang L, Khrebtukova I, Milne TA, Huang Y, Biswas D, Hess JL, Allis CD, Roeder RG, Valk PJ, Löwenberg B, Delwel R, Fernandez HF, Paietta E, Tallman MS, Schroth GP, Mason CE, Melnick A, Figueroa ME. Akalin A, et al. Among authors: schroth gp. PLoS Genet. 2012;8(6):e1002781. doi: 10.1371/journal.pgen.1002781. Epub 2012 Jun 21. PLoS Genet. 2012. PMID: 22737091 Free PMC article.
Meraculous: de novo genome assembly with short paired-end reads.
Chapman JA, Ho I, Sunkara S, Luo S, Schroth GP, Rokhsar DS. Chapman JA, et al. Among authors: schroth gp. PLoS One. 2011;6(8):e23501. doi: 10.1371/journal.pone.0023501. Epub 2011 Aug 18. PLoS One. 2011. PMID: 21876754 Free PMC article.
Chimeric transcript discovery by paired-end transcriptome sequencing.
Maher CA, Palanisamy N, Brenner JC, Cao X, Kalyana-Sundaram S, Luo S, Khrebtukova I, Barrette TR, Grasso C, Yu J, Lonigro RJ, Schroth G, Kumar-Sinha C, Chinnaiyan AM. Maher CA, et al. Proc Natl Acad Sci U S A. 2009 Jul 28;106(30):12353-8. doi: 10.1073/pnas.0904720106. Epub 2009 Jul 10. Proc Natl Acad Sci U S A. 2009. PMID: 19592507 Free PMC article.
122 results