Hoppe A - Search Results

1

FASIMU: flexible software for flux-balance computation series in large metabolic networks.

Hoppe A, Hoffmann S, Gerasch A, Gille C, Holzhütter HG. Hoppe A, et al. BMC Bioinformatics. 2011 Jan 22;12:28. doi: 10.1186/1471-2105-12-28. BMC Bioinformatics. 2011. PMID: 21255455 Free PMC article.

2

Composition of metabolic flux distributions by functionally interpretable minimal flux modes (MinModes).

Hoffmann S, Hoppe A, Holzhütter HG. Hoffmann S, et al. Among authors: hoppe a. Genome Inform. 2006;17(1):195-207. Genome Inform. 2006. PMID: 17503369

3

Including metabolite concentrations into flux balance analysis: thermodynamic realizability as a constraint on flux distributions in metabolic networks.

Hoppe A, Hoffmann S, Holzhütter HG. Hoppe A, et al. BMC Syst Biol. 2007 Jun 1;1:23. doi: 10.1186/1752-0509-1-23. BMC Syst Biol. 2007. PMID: 17543097 Free PMC article.

4

Pruning genome-scale metabolic models to consistent ad functionem networks.

Hoffmann S, Hoppe A, Holzhütter HG. Hoffmann S, et al. Among authors: hoppe a. Genome Inform. 2007;18:308-19. Genome Inform. 2007. PMID: 18546498

5

Antimalarial drug targets in Plasmodium falciparum predicted by stage-specific metabolic network analysis.

Huthmacher C, Hoppe A, Bulik S, Holzhütter HG. Huthmacher C, et al. Among authors: hoppe a. BMC Syst Biol. 2010 Aug 31;4:120. doi: 10.1186/1752-0509-4-120. BMC Syst Biol. 2010. PMID: 20807400 Free PMC article.

6

Metannogen: annotation of biological reaction networks.

Gille C, Hübner K, Hoppe A, Holzhütter HG. Gille C, et al. Among authors: hoppe a. Bioinformatics. 2011 Oct 1;27(19):2763-4. doi: 10.1093/bioinformatics/btr456. Epub 2011 Aug 8. Bioinformatics. 2011. PMID: 21824972

7

Network-based assessment of the selectivity of metabolic drug targets in Plasmodium falciparum with respect to human liver metabolism.

Bazzani S, Hoppe A, Holzhütter HG. Bazzani S, et al. Among authors: hoppe a. BMC Syst Biol. 2012 Aug 31;6:118. doi: 10.1186/1752-0509-6-118. BMC Syst Biol. 2012. PMID: 22937810 Free PMC article.

8

HepatoNet1: a comprehensive metabolic reconstruction of the human hepatocyte for the analysis of liver physiology.

Gille C, Bölling C, Hoppe A, Bulik S, Hoffmann S, Hübner K, Karlstädt A, Ganeshan R, König M, Rother K, Weidlich M, Behre J, Holzhütter HG. Gille C, et al. Among authors: hoppe a. Mol Syst Biol. 2010 Sep 7;6:411. doi: 10.1038/msb.2010.62. Mol Syst Biol. 2010. PMID: 20823849 Free PMC article.

9

Enzyme maintenance effort as criterion for the characterization of alternative pathways and length distribution of isofunctional enzymes.

Hoppe A, Richter C, Holzhütter HG. Hoppe A, et al. Biosystems. 2011 Aug;105(2):122-9. doi: 10.1016/j.biosystems.2011.05.006. Epub 2011 Jun 2. Biosystems. 2011. PMID: 21664944 No abstract available.

10

Metabolic Consequences of TGFb Stimulation in CulturedPrimary Mouse Hepatocytes Screened from Transcript Data with ModeScore .

Hoppe A, Ilkavets I, Dooley S, Holzhütter HG. Hoppe A, et al. Metabolites. 2012 Nov 21;2(4):983-1003. doi: 10.3390/metabo2040983. Metabolites. 2012. PMID: 24957771 Free PMC article.

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