Neuwald AF - Search Results

1

Bayesian classification of residues associated with protein functional divergence: Arf and Arf-like GTPases.

Neuwald AF. Neuwald AF. Biol Direct. 2010 Dec 3;5:66. doi: 10.1186/1745-6150-5-66. Biol Direct. 2010. PMID: 21129209 Free PMC article.

2

The charge-dipole pocket: a defining feature of signaling pathway GTPase on/off switches.

Neuwald AF. Neuwald AF. J Mol Biol. 2009 Jul 3;390(1):142-53. doi: 10.1016/j.jmb.2009.05.001. Epub 2009 May 7. J Mol Biol. 2009. PMID: 19427324 Free PMC article.

3

A Bayesian sampler for optimization of protein domain hierarchies.

Neuwald AF. Neuwald AF. J Comput Biol. 2014 Mar;21(3):269-86. doi: 10.1089/cmb.2013.0099. Epub 2014 Feb 4. J Comput Biol. 2014. PMID: 24494927 Free PMC article.

4

Automated hierarchical classification of protein domain subfamilies based on functionally-divergent residue signatures.

Neuwald AF, Lanczycki CJ, Marchler-Bauer A. Neuwald AF, et al. BMC Bioinformatics. 2012 Jun 22;13:144. doi: 10.1186/1471-2105-13-144. BMC Bioinformatics. 2012. PMID: 22726767 Free PMC article.

5

The glycine brace: a component of Rab, Rho, and Ran GTPases associated with hinge regions of guanine- and phosphate-binding loops.

Neuwald AF. Neuwald AF. BMC Struct Biol. 2009 Mar 5;9:11. doi: 10.1186/1472-6807-9-11. BMC Struct Biol. 2009. PMID: 19265520 Free PMC article.

6

Rapid detection, classification and accurate alignment of up to a million or more related protein sequences.

Neuwald AF. Neuwald AF. Bioinformatics. 2009 Aug 1;25(15):1869-75. doi: 10.1093/bioinformatics/btp342. Epub 2009 Jun 8. Bioinformatics. 2009. PMID: 19505947 Free PMC article.

7

Surveying the manifold divergence of an entire protein class for statistical clues to underlying biochemical mechanisms.

Neuwald AF. Neuwald AF. Stat Appl Genet Mol Biol. 2011;10(1):Article 36. doi: 10.2202/1544-6115.1666. Epub 2011 Aug 4. Stat Appl Genet Mol Biol. 2011. PMID: 22331370 Free PMC article.

8

Evaluating, comparing, and interpreting protein domain hierarchies.

Neuwald AF. Neuwald AF. J Comput Biol. 2014 Apr;21(4):287-302. doi: 10.1089/cmb.2013.0098. Epub 2014 Feb 21. J Comput Biol. 2014. PMID: 24559108 Free PMC article.

9

Gleaning structural and functional information from correlations in protein multiple sequence alignments.

Neuwald AF. Neuwald AF. Curr Opin Struct Biol. 2016 Jun;38:1-8. doi: 10.1016/j.sbi.2016.04.006. Epub 2016 May 12. Curr Opin Struct Biol. 2016. PMID: 27179293 Review.

10

Inference of Functionally-Relevant N-acetyltransferase Residues Based on Statistical Correlations.

Neuwald AF, Altschul SF. Neuwald AF, et al. PLoS Comput Biol. 2016 Dec 21;12(12):e1005294. doi: 10.1371/journal.pcbi.1005294. eCollection 2016 Dec. PLoS Comput Biol. 2016. PMID: 28002465 Free PMC article.

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