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Likelihood, parsimony, and heterogeneous evolution.
Spencer M, Susko E, Roger AJ. Spencer M, et al. Among authors: susko e. Mol Biol Evol. 2005 May;22(5):1161-4. doi: 10.1093/molbev/msi123. Epub 2005 Mar 2. Mol Biol Evol. 2005. PMID: 15746012
Modelling prokaryote gene content.
Spencer M, Susko E, Roger AJ. Spencer M, et al. Among authors: susko e. Evol Bioinform Online. 2007 Feb 5;2:157-78. Evol Bioinform Online. 2007. PMID: 19455209 Free PMC article.
Testing for covarion-like evolution in protein sequences.
Wang HC, Spencer M, Susko E, Roger AJ. Wang HC, et al. Among authors: susko e. Mol Biol Evol. 2007 Jan;24(1):294-305. doi: 10.1093/molbev/msl155. Epub 2006 Oct 20. Mol Biol Evol. 2007. PMID: 17056642
Topological estimation biases with covarion evolution.
Wang HC, Susko E, Spencer M, Roger AJ. Wang HC, et al. Among authors: susko e. J Mol Evol. 2008 Jan;66(1):50-60. doi: 10.1007/s00239-007-9062-4. Epub 2007 Dec 14. J Mol Evol. 2008. PMID: 18080080
Do orthologous gene phylogenies really support tree-thinking?
Bapteste E, Susko E, Leigh J, MacLeod D, Charlebois RL, Doolittle WF. Bapteste E, et al. Among authors: susko e. BMC Evol Biol. 2005 May 24;5:33. doi: 10.1186/1471-2148-5-33. BMC Evol Biol. 2005. PMID: 15913459 Free PMC article.
A test for heterotachy using multiple pairs of sequences.
Wu J, Susko E. Wu J, et al. Among authors: susko e. Mol Biol Evol. 2011 May;28(5):1661-73. doi: 10.1093/molbev/msq346. Epub 2010 Dec 24. Mol Biol Evol. 2011. PMID: 21186190
Heterotachy also can generally be viewed as multivariate rates-across-sites variation, which can be described as randomly drawing rates (or branch lengths) from a multivariate distribution for each branch at each site (Wu J, Susko E. 2009. General heterotachy and di …
Heterotachy also can generally be viewed as multivariate rates-across-sites variation, which can be described as randomly drawing rates (or …
83 results