Zambelli F - Search Results

1

ASPicDB: a database of annotated transcript and protein variants generated by alternative splicing.

Martelli PL, D'Antonio M, Bonizzoni P, Castrignanò T, D'Erchia AM, D'Onorio De Meo P, Fariselli P, Finelli M, Licciulli F, Mangiulli M, Mignone F, Pavesi G, Picardi E, Rizzi R, Rossi I, Valletti A, Zauli A, Zambelli F, Casadio R, Pesole G. Martelli PL, et al. Among authors: zambelli f. Nucleic Acids Res. 2011 Jan;39(Database issue):D80-5. doi: 10.1093/nar/gkq1073. Epub 2010 Nov 4. Nucleic Acids Res. 2011. PMID: 21051348 Free PMC article.

2

MoD Tools: regulatory motif discovery in nucleotide sequences from co-regulated or homologous genes.

Pavesi G, Mereghetti P, Zambelli F, Stefani M, Mauri G, Pesole G. Pavesi G, et al. Among authors: zambelli f. Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W566-70. doi: 10.1093/nar/gkl285. Nucleic Acids Res. 2006. PMID: 16845071 Free PMC article.

3

WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences.

Pavesi G, Zambelli F, Pesole G. Pavesi G, et al. Among authors: zambelli f. BMC Bioinformatics. 2007 Feb 7;8:46. doi: 10.1186/1471-2105-8-46. BMC Bioinformatics. 2007. PMID: 17286865 Free PMC article.

4

Exalign: a new method for comparative analysis of exon-intron gene structures.

Pavesi G, Zambelli F, Caggese C, Pesole G. Pavesi G, et al. Among authors: zambelli f. Nucleic Acids Res. 2008 May;36(8):e47. doi: 10.1093/nar/gkn153. Epub 2008 Apr 8. Nucleic Acids Res. 2008. PMID: 18397951 Free PMC article.

5

Pscan: finding over-represented transcription factor binding site motifs in sequences from co-regulated or co-expressed genes.

Zambelli F, Pesole G, Pavesi G. Zambelli F, et al. Nucleic Acids Res. 2009 Jul;37(Web Server issue):W247-52. doi: 10.1093/nar/gkp464. Epub 2009 May 31. Nucleic Acids Res. 2009. PMID: 19487240 Free PMC article.

6

A perspective of promoter architecture from the CCAAT box.

Dolfini D, Zambelli F, Pavesi G, Mantovani R. Dolfini D, et al. Among authors: zambelli f. Cell Cycle. 2009 Dec 15;8(24):4127-37. doi: 10.4161/cc.8.24.10240. Epub 2009 Dec 5. Cell Cycle. 2009. PMID: 19946211

7

Assessment of orthologous splicing isoforms in human and mouse orthologous genes.

Zambelli F, Pavesi G, Gissi C, Horner DS, Pesole G. Zambelli F, et al. BMC Genomics. 2010 Oct 1;11:534. doi: 10.1186/1471-2164-11-534. BMC Genomics. 2010. PMID: 20920313 Free PMC article.

8

Gain-of-function p53 mutants have widespread genomic locations partially overlapping with p63.

Martynova E, Pozzi S, Basile V, Dolfini D, Zambelli F, Imbriano C, Pavesi G, Mantovani R. Martynova E, et al. Among authors: zambelli f. Oncotarget. 2012 Feb;3(2):132-43. doi: 10.18632/oncotarget.447. Oncotarget. 2012. PMID: 22361592 Free PMC article.

9

Motif discovery and transcription factor binding sites before and after the next-generation sequencing era.

Zambelli F, Pesole G, Pavesi G. Zambelli F, et al. Brief Bioinform. 2013 Mar;14(2):225-37. doi: 10.1093/bib/bbs016. Epub 2012 Apr 19. Brief Bioinform. 2013. PMID: 22517426 Free PMC article.

10

Cscan: finding common regulators of a set of genes by using a collection of genome-wide ChIP-seq datasets.

Zambelli F, Prazzoli GM, Pesole G, Pavesi G. Zambelli F, et al. Nucleic Acids Res. 2012 Jul;40(Web Server issue):W510-5. doi: 10.1093/nar/gks483. Epub 2012 Jun 4. Nucleic Acids Res. 2012. PMID: 22669907 Free PMC article.

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