Abreu-Goodger C - Search Results

1

Theoretical and empirical quality assessment of transcription factor-binding motifs.

Medina-Rivera A, Abreu-Goodger C, Thomas-Chollier M, Salgado H, Collado-Vides J, van Helden J. Medina-Rivera A, et al. Nucleic Acids Res. 2011 Feb;39(3):808-24. doi: 10.1093/nar/gkq710. Epub 2010 Oct 4. Nucleic Acids Res. 2011. PMID: 20923783 Free PMC article.

2

Conservation of DNA curvature signals in regulatory regions of prokaryotic genes.

Jáuregui R, Abreu-Goodger C, Moreno-Hagelsieb G, Collado-Vides J, Merino E. Jáuregui R, et al. Nucleic Acids Res. 2003 Dec 1;31(23):6770-7. doi: 10.1093/nar/gkg882. Nucleic Acids Res. 2003. PMID: 14627810 Free PMC article.

3

RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation.

Gama-Castro S, Jiménez-Jacinto V, Peralta-Gil M, Santos-Zavaleta A, Peñaloza-Spinola MI, Contreras-Moreira B, Segura-Salazar J, Muñiz-Rascado L, Martínez-Flores I, Salgado H, Bonavides-Martínez C, Abreu-Goodger C, Rodríguez-Penagos C, Miranda-Ríos J, Morett E, Merino E, Huerta AM, Treviño-Quintanilla L, Collado-Vides J. Gama-Castro S, et al. Nucleic Acids Res. 2008 Jan;36(Database issue):D120-4. doi: 10.1093/nar/gkm994. Epub 2007 Dec 23. Nucleic Acids Res. 2008. PMID: 18158297 Free PMC article.

4

GeConT 2: gene context analysis for orthologous proteins, conserved domains and metabolic pathways.

Martinez-Guerrero CE, Ciria R, Abreu-Goodger C, Moreno-Hagelsieb G, Merino E. Martinez-Guerrero CE, et al. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W176-80. doi: 10.1093/nar/gkn330. Epub 2008 May 29. Nucleic Acids Res. 2008. PMID: 18511460 Free PMC article.

5

RibEx: a web server for locating riboswitches and other conserved bacterial regulatory elements.

Abreu-Goodger C, Merino E. Abreu-Goodger C, et al. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W690-2. doi: 10.1093/nar/gki445. Nucleic Acids Res. 2005. PMID: 15980564 Free PMC article.

6

A practical guide to sequencing genomes and transcriptomes.

Sanchez-Flores A, Abreu-Goodger C. Sanchez-Flores A, et al. Curr Top Med Chem. 2014;14(3):398-406. doi: 10.2174/1568026613666131204142353. Curr Top Med Chem. 2014. PMID: 24304310 Review.

7

Conserved regulatory motifs in bacteria: riboswitches and beyond.

Abreu-Goodger C, Ontiveros-Palacios N, Ciria R, Merino E. Abreu-Goodger C, et al. Trends Genet. 2004 Oct;20(10):475-9. doi: 10.1016/j.tig.2004.08.003. Trends Genet. 2004. PMID: 15363900

8

Disentangling sRNA-Seq data to study RNA communication between species.

Bermúdez-Barrientos JR, Ramírez-Sánchez O, Chow FW, Buck AH, Abreu-Goodger C. Bermúdez-Barrientos JR, et al. Nucleic Acids Res. 2020 Feb 28;48(4):e21. doi: 10.1093/nar/gkz1198. Nucleic Acids Res. 2020. PMID: 31879784 Free PMC article.

9

Efficient inhibition of miR-155 function in vivo by peptide nucleic acids.

Fabani MM, Abreu-Goodger C, Williams D, Lyons PA, Torres AG, Smith KG, Enright AJ, Gait MJ, Vigorito E. Fabani MM, et al. Nucleic Acids Res. 2010 Jul;38(13):4466-75. doi: 10.1093/nar/gkq160. Epub 2010 Mar 11. Nucleic Acids Res. 2010. PMID: 20223773 Free PMC article.

10

GeConT: gene context analysis.

Ciria R, Abreu-Goodger C, Morett E, Merino E. Ciria R, et al. Bioinformatics. 2004 Sep 22;20(14):2307-8. doi: 10.1093/bioinformatics/bth216. Epub 2004 Apr 8. Bioinformatics. 2004. PMID: 15073003

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