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mzML--a community standard for mass spectrometry data.
Martens L, Chambers M, Sturm M, Kessner D, Levander F, Shofstahl J, Tang WH, Römpp A, Neumann S, Pizarro AD, Montecchi-Palazzi L, Tasman N, Coleman M, Reisinger F, Souda P, Hermjakob H, Binz PA, Deutsch EW. Martens L, et al. Among authors: pizarro ad. Mol Cell Proteomics. 2011 Jan;10(1):R110.000133. doi: 10.1074/mcp.R110.000133. Epub 2010 Aug 17. Mol Cell Proteomics. 2011. PMID: 20716697 Free PMC article.
The mzIdentML data standard for mass spectrometry-based proteomics results.
Jones AR, Eisenacher M, Mayer G, Kohlbacher O, Siepen J, Hubbard SJ, Selley JN, Searle BC, Shofstahl J, Seymour SL, Julian R, Binz PA, Deutsch EW, Hermjakob H, Reisinger F, Griss J, Vizcaíno JA, Chambers M, Pizarro A, Creasy D. Jones AR, et al. Mol Cell Proteomics. 2012 Jul;11(7):M111.014381. doi: 10.1074/mcp.M111.014381. Epub 2012 Feb 27. Mol Cell Proteomics. 2012. PMID: 22375074 Free PMC article.
Analysis of the zebrafish proteome during embryonic development.
Lucitt MB, Price TS, Pizarro A, Wu W, Yocum AK, Seiler C, Pack MA, Blair IA, Fitzgerald GA, Grosser T. Lucitt MB, et al. Mol Cell Proteomics. 2008 May;7(5):981-94. doi: 10.1074/mcp.M700382-MCP200. Epub 2008 Jan 22. Mol Cell Proteomics. 2008. PMID: 18212345 Free PMC article.
The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics.
Jones AR, Miller M, Aebersold R, Apweiler R, Ball CA, Brazma A, Degreef J, Hardy N, Hermjakob H, Hubbard SJ, Hussey P, Igra M, Jenkins H, Julian RK Jr, Laursen K, Oliver SG, Paton NW, Sansone SA, Sarkans U, Stoeckert CJ Jr, Taylor CF, Whetzel PL, White JA, Spellman P, Pizarro A. Jones AR, et al. Nat Biotechnol. 2007 Oct;25(10):1127-33. doi: 10.1038/nbt1347. Nat Biotechnol. 2007. PMID: 17921998
FuGE: Functional Genomics Experiment Object Model.
Jones AR, Pizarro A, Spellman P, Miller M; FuGE Working Group. Jones AR, et al. OMICS. 2006 Summer;10(2):179-84. doi: 10.1089/omi.2006.10.179. OMICS. 2006. PMID: 16901224 Review.
27 results