Therneau TM - Search Results

1

Spatial normalization improves the quality of genotype calling for Affymetrix SNP 6.0 arrays.

Chai HS, Therneau TM, Bailey KR, Kocher JP. Chai HS, et al. Among authors: therneau tm. BMC Bioinformatics. 2010 Jun 29;11:356. doi: 10.1186/1471-2105-11-356. BMC Bioinformatics. 2010. PMID: 20587065 Free PMC article.

2

Faster cyclic loess: normalizing RNA arrays via linear models.

Ballman KV, Grill DE, Oberg AL, Therneau TM. Ballman KV, et al. Among authors: therneau tm. Bioinformatics. 2004 Nov 1;20(16):2778-86. doi: 10.1093/bioinformatics/bth327. Epub 2004 May 27. Bioinformatics. 2004. PMID: 15166021

3

Normalization of two-channel microarray experiments: a semiparametric approach.

Eckel JE, Gennings C, Therneau TM, Burgoon LD, Boverhof DR, Zacharewski TR. Eckel JE, et al. Among authors: therneau tm. Bioinformatics. 2005 Apr 1;21(7):1078-83. doi: 10.1093/bioinformatics/bti105. Epub 2004 Oct 28. Bioinformatics. 2005. PMID: 15513988

4

Experimental design and analysis of antibody microarrays: applying methods from cDNA arrays.

Eckel-Passow JE, Hoering A, Therneau TM, Ghobrial I. Eckel-Passow JE, et al. Among authors: therneau tm. Cancer Res. 2005 Apr 15;65(8):2985-9. doi: 10.1158/0008-5472.CAN-04-3213. Cancer Res. 2005. PMID: 15833819 Review.

5

Joint estimation of calibration and expression for high-density oligonucleotide arrays.

Oberg AL, Mahoney DW, Ballman KV, Therneau TM. Oberg AL, et al. Among authors: therneau tm. Bioinformatics. 2006 Oct 1;22(19):2381-7. doi: 10.1093/bioinformatics/btl399. Epub 2006 Jul 28. Bioinformatics. 2006. PMID: 16877757

6

3' tag digital gene expression profiling of human brain and universal reference RNA using Illumina Genome Analyzer.

Asmann YW, Klee EW, Thompson EA, Perez EA, Middha S, Oberg AL, Therneau TM, Smith DI, Poland GA, Wieben ED, Kocher JP. Asmann YW, et al. Among authors: therneau tm. BMC Genomics. 2009 Nov 16;10:531. doi: 10.1186/1471-2164-10-531. BMC Genomics. 2009. PMID: 19917133 Free PMC article.

7

Batch effect correction for genome-wide methylation data with Illumina Infinium platform.

Sun Z, Chai HS, Wu Y, White WM, Donkena KV, Klein CJ, Garovic VD, Therneau TM, Kocher JP. Sun Z, et al. Among authors: therneau tm. BMC Med Genomics. 2011 Dec 16;4:84. doi: 10.1186/1755-8794-4-84. BMC Med Genomics. 2011. PMID: 22171553 Free PMC article.

8

Quality assessment metrics for whole genome gene expression profiling of paraffin embedded samples.

Mahoney DW, Therneau TM, Anderson SK, Jen J, Kocher JP, Reinholz MM, Perez EA, Eckel-Passow JE. Mahoney DW, et al. Among authors: therneau tm. BMC Res Notes. 2013 Jan 30;6:33. doi: 10.1186/1756-0500-6-33. BMC Res Notes. 2013. PMID: 23360712 Free PMC article.

9

A new statistic for identifying batch effects in high-throughput genomic data that uses guided principal component analysis.

Reese SE, Archer KJ, Therneau TM, Atkinson EJ, Vachon CM, de Andrade M, Kocher JP, Eckel-Passow JE. Reese SE, et al. Among authors: therneau tm. Bioinformatics. 2013 Nov 15;29(22):2877-83. doi: 10.1093/bioinformatics/btt480. Epub 2013 Aug 19. Bioinformatics. 2013. PMID: 23958724 Free PMC article.

10

BIMA V3: an aligner customized for mate pair library sequencing.

Drucker TM, Johnson SH, Murphy SJ, Cradic KW, Therneau TM, Vasmatzis G. Drucker TM, et al. Among authors: therneau tm. Bioinformatics. 2014 Jun 1;30(11):1627-9. doi: 10.1093/bioinformatics/btu078. Epub 2014 Feb 12. Bioinformatics. 2014. PMID: 24526710

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