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Metadata matters: access to image data in the real world.
Linkert M, Rueden CT, Allan C, Burel JM, Moore W, Patterson A, Loranger B, Moore J, Neves C, Macdonald D, Tarkowska A, Sticco C, Hill E, Rossner M, Eliceiri KW, Swedlow JR. Linkert M, et al. Among authors: swedlow jr. J Cell Biol. 2010 May 31;189(5):777-82. doi: 10.1083/jcb.201004104. J Cell Biol. 2010. PMID: 20513764 Free PMC article.
Open tools for storage and management of quantitative image data.
Moore J, Allan C, Burel JM, Loranger B, MacDonald D, Monk J, Swedlow JR. Moore J, et al. Among authors: swedlow jr. Methods Cell Biol. 2008;85:555-70. doi: 10.1016/S0091-679X(08)85024-8. Methods Cell Biol. 2008. PMID: 18155479
Bioimage informatics for experimental biology.
Swedlow JR, Goldberg IG, Eliceiri KW; OME Consortium. Swedlow JR, et al. Annu Rev Biophys. 2009;38:327-46. doi: 10.1146/annurev.biophys.050708.133641. Annu Rev Biophys. 2009. PMID: 19416072 Free PMC article. Review.
Open source bioimage informatics for cell biology.
Swedlow JR, Eliceiri KW. Swedlow JR, et al. Trends Cell Biol. 2009 Nov;19(11):656-60. doi: 10.1016/j.tcb.2009.08.007. Epub 2009 Oct 14. Trends Cell Biol. 2009. PMID: 19833518 Free PMC article.
OMERO: flexible, model-driven data management for experimental biology.
Allan C, Burel JM, Moore J, Blackburn C, Linkert M, Loynton S, Macdonald D, Moore WJ, Neves C, Patterson A, Porter M, Tarkowska A, Loranger B, Avondo J, Lagerstedt I, Lianas L, Leo S, Hands K, Hay RT, Patwardhan A, Best C, Kleywegt GJ, Zanetti G, Swedlow JR. Allan C, et al. Among authors: swedlow jr. Nat Methods. 2012 Feb 28;9(3):245-53. doi: 10.1038/nmeth.1896. Nat Methods. 2012. PMID: 22373911 Free PMC article.
Biological imaging software tools.
Eliceiri KW, Berthold MR, Goldberg IG, Ibáñez L, Manjunath BS, Martone ME, Murphy RF, Peng H, Plant AL, Roysam B, Stuurman N, Swedlow JR, Tomancak P, Carpenter AE. Eliceiri KW, et al. Among authors: swedlow jr. Nat Methods. 2012 Jun 28;9(7):697-710. doi: 10.1038/nmeth.2084. Nat Methods. 2012. PMID: 22743775 Free PMC article.
Data management challenges in three-dimensional EM.
Patwardhan A, Carazo JM, Carragher B, Henderson R, Heymann JB, Hill E, Jensen GJ, Lagerstedt I, Lawson CL, Ludtke SJ, Mastronarde D, Moore WJ, Roseman A, Rosenthal P, Sorzano CO, Sanz-García E, Scheres SH, Subramaniam S, Westbrook J, Winn M, Swedlow JR, Kleywegt GJ. Patwardhan A, et al. Among authors: swedlow jr. Nat Struct Mol Biol. 2012 Dec;19(12):1203-7. doi: 10.1038/nsmb.2426. Nat Struct Mol Biol. 2012. PMID: 23211764 Free PMC article.
128 results