Xi Y - Search Results

1

Genome-wide reinforcement of cohesin binding at pre-existing cohesin sites in response to ionizing radiation in human cells.

Kim BJ, Li Y, Zhang J, Xi Y, Li Y, Yang T, Jung SY, Pan X, Chen R, Li W, Wang Y, Qin J. Kim BJ, et al. Among authors: xi y. J Biol Chem. 2010 Jul 23;285(30):22784-92. doi: 10.1074/jbc.M110.134577. Epub 2010 May 25. J Biol Chem. 2010. PMID: 20501661 Free PMC article.

2

BSMAP: whole genome bisulfite sequence MAPping program.

Xi Y, Li W. Xi Y, et al. BMC Bioinformatics. 2009 Jul 27;10:232. doi: 10.1186/1471-2105-10-232. BMC Bioinformatics. 2009. PMID: 19635165 Free PMC article.

3

A statistical method for the detection of alternative splicing using RNA-seq.

Wang L, Xi Y, Yu J, Dong L, Yen L, Li W. Wang L, et al. Among authors: xi y. PLoS One. 2010 Jan 8;5(1):e8529. doi: 10.1371/journal.pone.0008529. PLoS One. 2010. PMID: 20072613 Free PMC article.

4

Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications.

Harris RA, Wang T, Coarfa C, Nagarajan RP, Hong C, Downey SL, Johnson BE, Fouse SD, Delaney A, Zhao Y, Olshen A, Ballinger T, Zhou X, Forsberg KJ, Gu J, Echipare L, O'Geen H, Lister R, Pelizzola M, Xi Y, Epstein CB, Bernstein BE, Hawkins RD, Ren B, Chung WY, Gu H, Bock C, Gnirke A, Zhang MQ, Haussler D, Ecker JR, Li W, Farnham PJ, Waterland RA, Meissner A, Marra MA, Hirst M, Milosavljevic A, Costello JF. Harris RA, et al. Among authors: xi y. Nat Biotechnol. 2010 Oct;28(10):1097-105. doi: 10.1038/nbt.1682. Epub 2010 Sep 19. Nat Biotechnol. 2010. PMID: 20852635 Free PMC article.

5

In vivo Atoh1 targetome reveals how a proneural transcription factor regulates cerebellar development.

Klisch TJ, Xi Y, Flora A, Wang L, Li W, Zoghbi HY. Klisch TJ, et al. Among authors: xi y. Proc Natl Acad Sci U S A. 2011 Feb 22;108(8):3288-93. doi: 10.1073/pnas.1100230108. Epub 2011 Feb 7. Proc Natl Acad Sci U S A. 2011. PMID: 21300888 Free PMC article.

6

Nucleosome fragility reveals novel functional states of chromatin and poises genes for activation.

Xi Y, Yao J, Chen R, Li W, He X. Xi Y, et al. Genome Res. 2011 May;21(5):718-24. doi: 10.1101/gr.117101.110. Epub 2011 Mar 1. Genome Res. 2011. PMID: 21363969 Free PMC article.

7

RRBSMAP: a fast, accurate and user-friendly alignment tool for reduced representation bisulfite sequencing.

Xi Y, Bock C, Müller F, Sun D, Meissner A, Li W. Xi Y, et al. Bioinformatics. 2012 Feb 1;28(3):430-2. doi: 10.1093/bioinformatics/btr668. Epub 2011 Dec 6. Bioinformatics. 2012. PMID: 22155871 Free PMC article.

8

Research resource: The estrogen receptor α cistrome defined by DamIP.

Xiao R, Sun D, Ayers S, Xi Y, Li W, Baxter JD, Moore DD. Xiao R, et al. Among authors: xi y. Mol Endocrinol. 2012 Feb;26(2):349-57. doi: 10.1210/me.2011-1080. Epub 2011 Dec 29. Mol Endocrinol. 2012. PMID: 22207717 Free PMC article.

9

SIRT7 links H3K18 deacetylation to maintenance of oncogenic transformation.

Barber MF, Michishita-Kioi E, Xi Y, Tasselli L, Kioi M, Moqtaderi Z, Tennen RI, Paredes S, Young NL, Chen K, Struhl K, Garcia BA, Gozani O, Li W, Chua KF. Barber MF, et al. Among authors: xi y. Nature. 2012 Jul 5;487(7405):114-8. doi: 10.1038/nature11043. Nature. 2012. PMID: 22722849 Free PMC article.

10

DANPOS: dynamic analysis of nucleosome position and occupancy by sequencing.

Chen K, Xi Y, Pan X, Li Z, Kaestner K, Tyler J, Dent S, He X, Li W. Chen K, et al. Among authors: xi y. Genome Res. 2013 Feb;23(2):341-51. doi: 10.1101/gr.142067.112. Epub 2012 Nov 28. Genome Res. 2013. PMID: 23193179 Free PMC article.

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