Pu X - Search Results

1

PRED_PPI: a server for predicting protein-protein interactions based on sequence data with probability assignment.

Guo Y, Li M, Pu X, Li G, Guang X, Xiong W, Li J. Guo Y, et al. Among authors: pu x. BMC Res Notes. 2010 May 26;3:145. doi: 10.1186/1756-0500-3-145. BMC Res Notes. 2010. PMID: 20500905 Free PMC article.

2

Effects of the position and manner of hydration on the stability of solvated N-methylacetamides and the strength of binding between N-methylacetamide and water clusters: a computational study.

Xiao X, Tan Y, Zhu L, Guo Y, Wen Z, Li M, Pu X, Tian A. Xiao X, et al. Among authors: pu x. J Mol Model. 2012 Apr;18(4):1389-99. doi: 10.1007/s00894-011-1166-5. Epub 2011 Jul 15. J Mol Model. 2012. PMID: 21761178

3

Predicting deleterious non-synonymous single nucleotide polymorphisms in signal peptides based on hybrid sequence attributes.

Qin W, Li Y, Li J, Yu L, Wu D, Jing R, Pu X, Guo Y, Li M. Qin W, et al. Among authors: pu x. Comput Biol Chem. 2012 Feb;36:31-5. doi: 10.1016/j.compbiolchem.2011.12.001. Epub 2011 Dec 30. Comput Biol Chem. 2012. PMID: 22277674

4

Effects of organic solvent and crystal water on γ-chymotrypsin in acetonitrile media: observations from molecular dynamics simulation and DFT calculation.

Zhu L, Yang W, Meng YY, Xiao X, Guo Y, Pu X, Li M. Zhu L, et al. Among authors: pu x. J Phys Chem B. 2012 Mar 15;116(10):3292-304. doi: 10.1021/jp3002405. Epub 2012 Mar 5. J Phys Chem B. 2012. PMID: 22320259

5

Prediction of flavin mono-nucleotide binding sites using modified PSSM profile and ensemble support vector machine.

Wang X, Mi G, Wang C, Zhang Y, Li J, Guo Y, Pu X, Li M. Wang X, et al. Among authors: pu x. Comput Biol Med. 2012 Nov;42(11):1053-9. doi: 10.1016/j.compbiomed.2012.08.005. Epub 2012 Sep 14. Comput Biol Med. 2012. PMID: 22985817

6

Effects of water content on the tetrahedral intermediate of chymotrypsin - trifluoromethylketone in polar and non-polar media: observations from molecular dynamics simulation.

Tian X, Jiang L, Yuan Y, Wang M, Guo Y, Zeng X, Li M, Pu X. Tian X, et al. Among authors: pu x. J Mol Model. 2013 Jun;19(6):2525-38. doi: 10.1007/s00894-013-1807-y. Epub 2013 Mar 1. J Mol Model. 2013. PMID: 23455930

In contrast, the water content change in the two organic solvents does not play an observable role in the stability of catalytic hydrogen-bond network, which still exhibits high stability in all hydration levels, different from observations on the free enzyme system [Zhu L, Yang …

In contrast, the water content change in the two organic solvents does not play an observable role in the stability of catalytic hydrogen-bo …

7

Effects of organic solvents and substrate binding on trypsin in acetonitrile and hexane media.

Meng Y, Yuan Y, Zhu Y, Guo Y, Li M, Wang Z, Pu X, Jiang L. Meng Y, et al. Among authors: pu x. J Mol Model. 2013 Sep;19(9):3749-66. doi: 10.1007/s00894-013-1900-2. Epub 2013 Jun 23. J Mol Model. 2013. PMID: 23793739

8

In silico identification of Gram-negative bacterial secreted proteins from primary sequence.

Yu L, Luo J, Guo Y, Li Y, Pu X, Li M. Yu L, et al. Among authors: pu x. Comput Biol Med. 2013 Sep;43(9):1177-81. doi: 10.1016/j.compbiomed.2013.06.001. Epub 2013 Jun 11. Comput Biol Med. 2013. PMID: 23930811

9

Effective identification of Gram-negative bacterial type III secreted effectors using position-specific residue conservation profiles.

Yang X, Guo Y, Luo J, Pu X, Li M. Yang X, et al. Among authors: pu x. PLoS One. 2013 Dec 31;8(12):e84439. doi: 10.1371/journal.pone.0084439. eCollection 2013. PLoS One. 2013. PMID: 24391954 Free PMC article.

10

Understanding the effects on constitutive activation and drug binding of a D130N mutation in the β2 adrenergic receptor via molecular dynamics simulation.

Zhu Y, Yuan Y, Xiao X, Zhang L, Guo Y, Pu X. Zhu Y, et al. Among authors: pu x. J Mol Model. 2014 Nov;20(11):2491. doi: 10.1007/s00894-014-2491-2. Epub 2014 Oct 25. J Mol Model. 2014. PMID: 25342155

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