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Page 1
Meeting report: a workshop on Best Practices in Genome Annotation.
Madupu R, Brinkac LM, Harrow J, Wilming LG, Böhme U, Lamesch P, Hannick LI. Madupu R, et al. Among authors: brinkac lm. Database (Oxford). 2010;2010:baq001. doi: 10.1093/database/baq001. Epub 2010 Feb 18. Database (Oxford). 2010. PMID: 20428316 Free PMC article.
Complete genome sequence and comparative genomic analysis of an emerging human pathogen, serotype V Streptococcus agalactiae.
Tettelin H, Masignani V, Cieslewicz MJ, Eisen JA, Peterson S, Wessels MR, Paulsen IT, Nelson KE, Margarit I, Read TD, Madoff LC, Wolf AM, Beanan MJ, Brinkac LM, Daugherty SC, DeBoy RT, Durkin AS, Kolonay JF, Madupu R, Lewis MR, Radune D, Fedorova NB, Scanlan D, Khouri H, Mulligan S, Carty HA, Cline RT, Van Aken SE, Gill J, Scarselli M, Mora M, Iacobini ET, Brettoni C, Galli G, Mariani M, Vegni F, Maione D, Rinaudo D, Rappuoli R, Telford JL, Kasper DL, Grandi G, Fraser CM. Tettelin H, et al. Among authors: brinkac lm. Proc Natl Acad Sci U S A. 2002 Sep 17;99(19):12391-6. doi: 10.1073/pnas.182380799. Epub 2002 Aug 28. Proc Natl Acad Sci U S A. 2002. PMID: 12200547 Free PMC article.
Genome sequence of the dissimilatory metal ion-reducing bacterium Shewanella oneidensis.
Heidelberg JF, Paulsen IT, Nelson KE, Gaidos EJ, Nelson WC, Read TD, Eisen JA, Seshadri R, Ward N, Methe B, Clayton RA, Meyer T, Tsapin A, Scott J, Beanan M, Brinkac L, Daugherty S, DeBoy RT, Dodson RJ, Durkin AS, Haft DH, Kolonay JF, Madupu R, Peterson JD, Umayam LA, White O, Wolf AM, Vamathevan J, Weidman J, Impraim M, Lee K, Berry K, Lee C, Mueller J, Khouri H, Gill J, Utterback TR, McDonald LA, Feldblyum TV, Smith HO, Venter JC, Nealson KH, Fraser CM. Heidelberg JF, et al. Nat Biotechnol. 2002 Nov;20(11):1118-23. doi: 10.1038/nbt749. Epub 2002 Oct 7. Nat Biotechnol. 2002. PMID: 12368813
Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440.
Nelson KE, Weinel C, Paulsen IT, Dodson RJ, Hilbert H, Martins dos Santos VA, Fouts DE, Gill SR, Pop M, Holmes M, Brinkac L, Beanan M, DeBoy RT, Daugherty S, Kolonay J, Madupu R, Nelson W, White O, Peterson J, Khouri H, Hance I, Chris Lee P, Holtzapple E, Scanlan D, Tran K, Moazzez A, Utterback T, Rizzo M, Lee K, Kosack D, Moestl D, Wedler H, Lauber J, Stjepandic D, Hoheisel J, Straetz M, Heim S, Kiewitz C, Eisen JA, Timmis KN, Düsterhöft A, Tümmler B, Fraser CM. Nelson KE, et al. Environ Microbiol. 2002 Dec;4(12):799-808. doi: 10.1046/j.1462-2920.2002.00366.x. Environ Microbiol. 2002. PMID: 12534463
Complete genome sequence of the Q-fever pathogen Coxiella burnetii.
Seshadri R, Paulsen IT, Eisen JA, Read TD, Nelson KE, Nelson WC, Ward NL, Tettelin H, Davidsen TM, Beanan MJ, Deboy RT, Daugherty SC, Brinkac LM, Madupu R, Dodson RJ, Khouri HM, Lee KH, Carty HA, Scanlan D, Heinzen RA, Thompson HA, Samuel JE, Fraser CM, Heidelberg JF. Seshadri R, et al. Among authors: brinkac lm. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5455-60. doi: 10.1073/pnas.0931379100. Epub 2003 Apr 18. Proc Natl Acad Sci U S A. 2003. PMID: 12704232 Free PMC article.
Phylogenomics of the reproductive parasite Wolbachia pipientis wMel: a streamlined genome overrun by mobile genetic elements.
Wu M, Sun LV, Vamathevan J, Riegler M, Deboy R, Brownlie JC, McGraw EA, Martin W, Esser C, Ahmadinejad N, Wiegand C, Madupu R, Beanan MJ, Brinkac LM, Daugherty SC, Durkin AS, Kolonay JF, Nelson WC, Mohamoud Y, Lee P, Berry K, Young MB, Utterback T, Weidman J, Nierman WC, Paulsen IT, Nelson KE, Tettelin H, O'Neill SL, Eisen JA. Wu M, et al. Among authors: brinkac lm. PLoS Biol. 2004 Mar;2(3):E69. doi: 10.1371/journal.pbio.0020069. Epub 2004 Mar 16. PLoS Biol. 2004. PMID: 15024419 Free PMC article.
Comparison of the genome of the oral pathogen Treponema denticola with other spirochete genomes.
Seshadri R, Myers GS, Tettelin H, Eisen JA, Heidelberg JF, Dodson RJ, Davidsen TM, DeBoy RT, Fouts DE, Haft DH, Selengut J, Ren Q, Brinkac LM, Madupu R, Kolonay J, Durkin SA, Daugherty SC, Shetty J, Shvartsbeyn A, Gebregeorgis E, Geer K, Tsegaye G, Malek J, Ayodeji B, Shatsman S, McLeod MP, Smajs D, Howell JK, Pal S, Amin A, Vashisth P, McNeill TZ, Xiang Q, Sodergren E, Baca E, Weinstock GM, Norris SJ, Fraser CM, Paulsen IT. Seshadri R, et al. Among authors: brinkac lm. Proc Natl Acad Sci U S A. 2004 Apr 13;101(15):5646-51. doi: 10.1073/pnas.0307639101. Epub 2004 Apr 2. Proc Natl Acad Sci U S A. 2004. PMID: 15064399 Free PMC article.
Whole genome comparisons of serotype 4b and 1/2a strains of the food-borne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species.
Nelson KE, Fouts DE, Mongodin EF, Ravel J, DeBoy RT, Kolonay JF, Rasko DA, Angiuoli SV, Gill SR, Paulsen IT, Peterson J, White O, Nelson WC, Nierman W, Beanan MJ, Brinkac LM, Daugherty SC, Dodson RJ, Durkin AS, Madupu R, Haft DH, Selengut J, Van Aken S, Khouri H, Fedorova N, Forberger H, Tran B, Kathariou S, Wonderling LD, Uhlich GA, Bayles DO, Luchansky JB, Fraser CM. Nelson KE, et al. Among authors: brinkac lm. Nucleic Acids Res. 2004 Apr 28;32(8):2386-95. doi: 10.1093/nar/gkh562. Print 2004. Nucleic Acids Res. 2004. PMID: 15115801 Free PMC article.
86 results