Kopka J - Search Results

1

Inter-laboratory reproducibility of fast gas chromatography-electron impact-time of flight mass spectrometry (GC-EI-TOF/MS) based plant metabolomics.

Allwood JW, Erban A, de Koning S, Dunn WB, Luedemann A, Lommen A, Kay L, Löscher R, Kopka J, Goodacre R. Allwood JW, et al. Among authors: kopka j. Metabolomics. 2009 Dec;5(4):479-496. doi: 10.1007/s11306-009-0169-z. Epub 2009 Jul 24. Metabolomics. 2009. PMID: 20376177 Free PMC article.

2

CSB.DB: a comprehensive systems-biology database.

Steinhauser D, Usadel B, Luedemann A, Thimm O, Kopka J. Steinhauser D, et al. Among authors: kopka j. Bioinformatics. 2004 Dec 12;20(18):3647-51. doi: 10.1093/bioinformatics/bth398. Epub 2004 Jul 9. Bioinformatics. 2004. PMID: 15247097

3

Metabolome analysis: the potential of in vivo labeling with stable isotopes for metabolite profiling.

Birkemeyer C, Luedemann A, Wagner C, Erban A, Kopka J. Birkemeyer C, et al. Among authors: kopka j. Trends Biotechnol. 2005 Jan;23(1):28-33. doi: 10.1016/j.tibtech.2004.12.001. Trends Biotechnol. 2005. PMID: 15629855 Review.

4

Metabolic labeling of plant cell cultures with K(15)NO3 as a tool for quantitative analysis of proteins and metabolites.

Engelsberger WR, Erban A, Kopka J, Schulze WX. Engelsberger WR, et al. Among authors: kopka j. Plant Methods. 2006 Sep 4;2:14. doi: 10.1186/1746-4811-2-14. Plant Methods. 2006. PMID: 16948866 Free PMC article.

5

Nonsupervised construction and application of mass spectral and retention time index libraries from time-of-flight gas chromatography-mass spectrometry metabolite profiles.

Erban A, Schauer N, Fernie AR, Kopka J. Erban A, et al. Among authors: kopka j. Methods Mol Biol. 2007;358:19-38. doi: 10.1007/978-1-59745-244-1_2. Methods Mol Biol. 2007. PMID: 17035678

6

TagFinder for the quantitative analysis of gas chromatography--mass spectrometry (GC-MS)-based metabolite profiling experiments.

Luedemann A, Strassburg K, Erban A, Kopka J. Luedemann A, et al. Among authors: kopka j. Bioinformatics. 2008 Mar 1;24(5):732-7. doi: 10.1093/bioinformatics/btn023. Epub 2008 Jan 19. Bioinformatics. 2008. PMID: 18204057

7

Retention index thresholds for compound matching in GC-MS metabolite profiling.

Strehmel N, Hummel J, Erban A, Strassburg K, Kopka J. Strehmel N, et al. Among authors: kopka j. J Chromatogr B Analyt Technol Biomed Life Sci. 2008 Aug 15;871(2):182-90. doi: 10.1016/j.jchromb.2008.04.042. Epub 2008 May 8. J Chromatogr B Analyt Technol Biomed Life Sci. 2008. PMID: 18501684

8

Relationship between grazing lamb growth rate and blood plasma analytes as profiled by gas chromatography with time-of-flight mass spectrometry (GC-TOF/MS).

Parveen I, Moorby JM, Fraser MD, Erban A, Kopka J. Parveen I, et al. Among authors: kopka j. J Agric Food Chem. 2010 Jan 27;58(2):913-7. doi: 10.1021/jf902116m. J Agric Food Chem. 2010. PMID: 20025220

9

Metabolic profiling of Arabidopsis thaliana epidermal cells.

Ebert B, Zöller D, Erban A, Fehrle I, Hartmann J, Niehl A, Kopka J, Fisahn J. Ebert B, et al. Among authors: kopka j. J Exp Bot. 2010 Mar;61(5):1321-35. doi: 10.1093/jxb/erq002. Epub 2010 Feb 11. J Exp Bot. 2010. PMID: 20150518 Free PMC article.

10

Extensive metabolic cross-talk in melon fruit revealed by spatial and developmental combinatorial metabolomics.

Moing A, Aharoni A, Biais B, Rogachev I, Meir S, Brodsky L, Allwood JW, Erban A, Dunn WB, Kay L, de Koning S, de Vos RC, Jonker H, Mumm R, Deborde C, Maucourt M, Bernillon S, Gibon Y, Hansen TH, Husted S, Goodacre R, Kopka J, Schjoerring JK, Rolin D, Hall RD. Moing A, et al. Among authors: kopka j. New Phytol. 2011 May;190(3):683-96. doi: 10.1111/j.1469-8137.2010.03626.x. Epub 2011 Jan 28. New Phytol. 2011. PMID: 21275993 Free article.

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