Eddy JA - Search Results

1

Relative expression analysis for molecular cancer diagnosis and prognosis.

Eddy JA, Sung J, Geman D, Price ND. Eddy JA, et al. Technol Cancer Res Treat. 2010 Apr;9(2):149-59. doi: 10.1177/153303461000900204. Technol Cancer Res Treat. 2010. PMID: 20218737 Free PMC article. Review.

2

Relative expression analysis for identifying perturbed pathways.

Eddy JA, Geman D, Price ND. Eddy JA, et al. Annu Int Conf IEEE Eng Med Biol Soc. 2009;2009:5456-9. doi: 10.1109/IEMBS.2009.5334063. Annu Int Conf IEEE Eng Med Biol Soc. 2009. PMID: 19964680 Free PMC article.

3

Identifying tightly regulated and variably expressed networks by Differential Rank Conservation (DIRAC).

Eddy JA, Hood L, Price ND, Geman D. Eddy JA, et al. PLoS Comput Biol. 2010 May 27;6(5):e1000792. doi: 10.1371/journal.pcbi.1000792. PLoS Comput Biol. 2010. PMID: 20523739 Free PMC article.

4

In silico models of cancer.

Edelman LB, Eddy JA, Price ND. Edelman LB, et al. Among authors: eddy ja. Wiley Interdiscip Rev Syst Biol Med. 2010 Jul-Aug;2(4):438-459. doi: 10.1002/wsbm.75. Wiley Interdiscip Rev Syst Biol Med. 2010. PMID: 20836040 Free PMC article. Review.

5

Graphics processing unit implementations of relative expression analysis algorithms enable dramatic computational speedup.

Magis AT, Earls JC, Ko YH, Eddy JA, Price ND. Magis AT, et al. Among authors: eddy ja. Bioinformatics. 2011 Mar 15;27(6):872-3. doi: 10.1093/bioinformatics/btr033. Epub 2011 Jan 20. Bioinformatics. 2011. PMID: 21257608 Free PMC article.

6

Transcriptional analysis of aggressiveness and heterogeneity across grades of astrocytomas.

Wang C, Funk CC, Eddy JA, Price ND. Wang C, et al. Among authors: eddy ja. PLoS One. 2013 Oct 11;8(10):e76694. doi: 10.1371/journal.pone.0076694. eCollection 2013. PLoS One. 2013. PMID: 24146911 Free PMC article.

7

Accomplishments in genome-scale in silico modeling for industrial and medical biotechnology.

Milne CB, Kim PJ, Eddy JA, Price ND. Milne CB, et al. Among authors: eddy ja. Biotechnol J. 2009 Dec;4(12):1653-70. doi: 10.1002/biot.200900234. Biotechnol J. 2009. PMID: 19946878 Free PMC article. Review.

8

Cell type-specific genes show striking and distinct patterns of spatial expression in the mouse brain.

Ko Y, Ament SA, Eddy JA, Caballero J, Earls JC, Hood L, Price ND. Ko Y, et al. Among authors: eddy ja. Proc Natl Acad Sci U S A. 2013 Feb 19;110(8):3095-100. doi: 10.1073/pnas.1222897110. Epub 2013 Feb 5. Proc Natl Acad Sci U S A. 2013. PMID: 23386717 Free PMC article.

9

AUREA: an open-source software system for accurate and user-friendly identification of relative expression molecular signatures.

Earls JC, Eddy JA, Funk CC, Ko Y, Magis AT, Price ND. Earls JC, et al. Among authors: eddy ja. BMC Bioinformatics. 2013 Mar 5;14:78. doi: 10.1186/1471-2105-14-78. BMC Bioinformatics. 2013. PMID: 23496976 Free PMC article.

10

Metabolic network reconstruction and genome-scale model of butanol-producing strain Clostridium beijerinckii NCIMB 8052.

Milne CB, Eddy JA, Raju R, Ardekani S, Kim PJ, Senger RS, Jin YS, Blaschek HP, Price ND. Milne CB, et al. Among authors: eddy ja. BMC Syst Biol. 2011 Aug 16;5:130. doi: 10.1186/1752-0509-5-130. BMC Syst Biol. 2011. PMID: 21846360 Free PMC article.

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