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PANGEA: pipeline for analysis of next generation amplicons.
Giongo A, Crabb DB, Davis-Richardson AG, Chauliac D, Mobberley JM, Gano KA, Mukherjee N, Casella G, Roesch LF, Walts B, Riva A, King G, Triplett EW. Giongo A, et al. ISME J. 2010 Jul;4(7):852-61. doi: 10.1038/ismej.2010.16. Epub 2010 Feb 25. ISME J. 2010. PMID: 20182525 Free PMC article.
Gut microbiome metagenomics analysis suggests a functional model for the development of autoimmunity for type 1 diabetes.
Brown CT, Davis-Richardson AG, Giongo A, Gano KA, Crabb DB, Mukherjee N, Casella G, Drew JC, Ilonen J, Knip M, Hyöty H, Veijola R, Simell T, Simell O, Neu J, Wasserfall CH, Schatz D, Atkinson MA, Triplett EW. Brown CT, et al. PLoS One. 2011;6(10):e25792. doi: 10.1371/journal.pone.0025792. Epub 2011 Oct 17. PLoS One. 2011. PMID: 22043294 Free PMC article.
Early childhood gut microbiomes show strong geographic differences among subjects at high risk for type 1 diabetes.
Kemppainen KM, Ardissone AN, Davis-Richardson AG, Fagen JR, Gano KA, León-Novelo LG, Vehik K, Casella G, Simell O, Ziegler AG, Rewers MJ, Lernmark Å, Hagopian W, She JX, Krischer JP, Akolkar B, Schatz DA, Atkinson MA, Triplett EW; TEDDY Study Group. Kemppainen KM, et al. Diabetes Care. 2015 Feb;38(2):329-32. doi: 10.2337/dc14-0850. Epub 2014 Dec 17. Diabetes Care. 2015. PMID: 25519450 Free PMC article.
Ca. Nitrososphaera and Bradyrhizobium are inversely correlated and related to agricultural practices in long-term field experiments.
Zhalnina K, de Quadros PD, Gano KA, Davis-Richardson A, Fagen JR, Brown CT, Giongo A, Drew JC, Sayavedra-Soto LA, Arp DJ, Camargo FA, Daroub SH, Clark IM, McGrath SP, Hirsch PR, Triplett EW. Zhalnina K, et al. Front Microbiol. 2013 May 1;4:104. doi: 10.3389/fmicb.2013.00104. eCollection 2013. Front Microbiol. 2013. PMID: 23641242 Free PMC article.
Microbial hitchhikers on intercontinental dust: catching a lift in Chad.
Favet J, Lapanje A, Giongo A, Kennedy S, Aung YY, Cattaneo A, Davis-Richardson AG, Brown CT, Kort R, Brumsack HJ, Schnetger B, Chappell A, Kroijenga J, Beck A, Schwibbert K, Mohamed AH, Kirchner T, de Quadros PD, Triplett EW, Broughton WJ, Gorbushina AA. Favet J, et al. ISME J. 2013 Apr;7(4):850-67. doi: 10.1038/ismej.2012.152. Epub 2012 Dec 20. ISME J. 2013. PMID: 23254516 Free PMC article.
27 results