Shabalina SA - Search Results

1

Abundance of type I toxin-antitoxin systems in bacteria: searches for new candidates and discovery of novel families.

Fozo EM, Makarova KS, Shabalina SA, Yutin N, Koonin EV, Storz G. Fozo EM, et al. Among authors: shabalina sa. Nucleic Acids Res. 2010 Jun;38(11):3743-59. doi: 10.1093/nar/gkq054. Epub 2010 Feb 15. Nucleic Acids Res. 2010. PMID: 20156992 Free PMC article.

2

Webb CT, Shabalina SA, Ogurtsov AY, Kondrashov AS. Webb CT, et al. Among authors: shabalina sa. Nucleic Acids Res. 2002 Mar 1;30(5):1233-9. doi: 10.1093/nar/30.5.1233. Nucleic Acids Res. 2002. PMID: 11861916 Free PMC article.

3

A significant fraction of conserved noncoding DNA in human and mouse consists of predicted matrix attachment regions.

Glazko GV, Koonin EV, Rogozin IB, Shabalina SA. Glazko GV, et al. Among authors: shabalina sa. Trends Genet. 2003 Mar;19(3):119-24. doi: 10.1016/S0168-9525(03)00016-7. Trends Genet. 2003. PMID: 12615002 Review.

4

Patterns in interspecies similarity correlate with nucleotide composition in mammalian 3'UTRs.

Shabalina SA, Ogurtsov AY, Lipman DJ, Kondrashov AS. Shabalina SA, et al. Nucleic Acids Res. 2003 Sep 15;31(18):5433-9. doi: 10.1093/nar/gkg751. Nucleic Acids Res. 2003. PMID: 12954780 Free PMC article.

5

Comparative analysis of orthologous eukaryotic mRNAs: potential hidden functional signals.

Shabalina SA, Ogurtsov AY, Rogozin IB, Koonin EV, Lipman DJ. Shabalina SA, et al. Nucleic Acids Res. 2004 Mar 18;32(5):1774-82. doi: 10.1093/nar/gkh313. Print 2004. Nucleic Acids Res. 2004. PMID: 15031317 Free PMC article.

6

Identification and functional analysis of 'hypothetical' genes expressed in Haemophilus influenzae.

Kolker E, Makarova KS, Shabalina S, Picone AF, Purvine S, Holzman T, Cherny T, Armbruster D, Munson RS Jr, Kolesov G, Frishman D, Galperin MY. Kolker E, et al. Nucleic Acids Res. 2004 Apr 30;32(8):2353-61. doi: 10.1093/nar/gkh555. Print 2004. Nucleic Acids Res. 2004. PMID: 15121896 Free PMC article.

7

A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action.

Makarova KS, Grishin NV, Shabalina SA, Wolf YI, Koonin EV. Makarova KS, et al. Among authors: shabalina sa. Biol Direct. 2006 Mar 16;1:7. doi: 10.1186/1745-6150-1-7. Biol Direct. 2006. PMID: 16545108 Free PMC article.

8

A periodic pattern of mRNA secondary structure created by the genetic code.

Shabalina SA, Ogurtsov AY, Spiridonov NA. Shabalina SA, et al. Nucleic Acids Res. 2006 May 8;34(8):2428-37. doi: 10.1093/nar/gkl287. Print 2006. Nucleic Acids Res. 2006. PMID: 16682450 Free PMC article.

9

Widespread positive selection in synonymous sites of mammalian genes.

Resch AM, Carmel L, Mariño-Ramírez L, Ogurtsov AY, Shabalina SA, Rogozin IB, Koonin EV. Resch AM, et al. Among authors: shabalina sa. Mol Biol Evol. 2007 Aug;24(8):1821-31. doi: 10.1093/molbev/msm100. Epub 2007 May 23. Mol Biol Evol. 2007. PMID: 17522087 Free PMC article.

10

Origins and evolution of eukaryotic RNA interference.

Shabalina SA, Koonin EV. Shabalina SA, et al. Trends Ecol Evol. 2008 Oct;23(10):578-87. doi: 10.1016/j.tree.2008.06.005. Epub 2008 Aug 18. Trends Ecol Evol. 2008. PMID: 18715673 Free PMC article. Review.

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