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PHENIX: a comprehensive Python-based system for macromolecular structure solution.
Adams PD, Afonine PV, Bunkóczi G, Chen VB, Davis IW, Echols N, Headd JJ, Hung LW, Kapral GJ, Grosse-Kunstleve RW, McCoy AJ, Moriarty NW, Oeffner R, Read RJ, Richardson DC, Richardson JS, Terwilliger TC, Zwart PH. Adams PD, et al. Among authors: echols n. Acta Crystallogr D Biol Crystallogr. 2010 Feb;66(Pt 2):213-21. doi: 10.1107/S0907444909052925. Epub 2010 Jan 22. Acta Crystallogr D Biol Crystallogr. 2010. PMID: 20124702 Free PMC article.
New Python-based methods for data processing.
Sauter NK, Hattne J, Grosse-Kunstleve RW, Echols N. Sauter NK, et al. Among authors: echols n. Acta Crystallogr D Biol Crystallogr. 2013 Jul;69(Pt 7):1274-82. doi: 10.1107/S0907444913000863. Epub 2013 Jun 18. Acta Crystallogr D Biol Crystallogr. 2013. PMID: 23793153 Free PMC article.
Phaser.MRage: automated molecular replacement.
Bunkóczi G, Echols N, McCoy AJ, Oeffner RD, Adams PD, Read RJ. Bunkóczi G, et al. Among authors: echols n. Acta Crystallogr D Biol Crystallogr. 2013 Nov;69(Pt 11):2276-86. doi: 10.1107/S0907444913022750. Epub 2013 Oct 18. Acta Crystallogr D Biol Crystallogr. 2013. PMID: 24189240 Free PMC article. Review.
Ligand placement based on prior structures: the guided ligand-replacement method.
Klei HE, Moriarty NW, Echols N, Terwilliger TC, Baldwin ET, Pokross M, Posy S, Adams PD. Klei HE, et al. Among authors: echols n. Acta Crystallogr D Biol Crystallogr. 2014 Jan;70(Pt 1):134-43. doi: 10.1107/S1399004713030071. Epub 2013 Dec 25. Acta Crystallogr D Biol Crystallogr. 2014. PMID: 24419386 Free PMC article.
Automating crystallographic structure solution and refinement of protein-ligand complexes.
Echols N, Moriarty NW, Klei HE, Afonine PV, Bunkóczi G, Headd JJ, McCoy AJ, Oeffner RD, Read RJ, Terwilliger TC, Adams PD. Echols N, et al. Acta Crystallogr D Biol Crystallogr. 2014 Jan;70(Pt 1):144-54. doi: 10.1107/S139900471302748X. Epub 2013 Dec 25. Acta Crystallogr D Biol Crystallogr. 2014. PMID: 24419387 Free PMC article.
Automated identification of elemental ions in macromolecular crystal structures.
Echols N, Morshed N, Afonine PV, McCoy AJ, Miller MD, Read RJ, Richardson JS, Terwilliger TC, Adams PD. Echols N, et al. Acta Crystallogr D Biol Crystallogr. 2014 Apr;70(Pt 4):1104-14. doi: 10.1107/S1399004714001308. Epub 2014 Mar 20. Acta Crystallogr D Biol Crystallogr. 2014. PMID: 24699654 Free PMC article.
Improved crystal orientation and physical properties from single-shot XFEL stills.
Sauter NK, Hattne J, Brewster AS, Echols N, Zwart PH, Adams PD. Sauter NK, et al. Among authors: echols n. Acta Crystallogr D Biol Crystallogr. 2014 Dec 1;70(Pt 12):3299-309. doi: 10.1107/S1399004714024134. Epub 2014 Nov 28. Acta Crystallogr D Biol Crystallogr. 2014. PMID: 25478847 Free PMC article.
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