Xie Y - Search Results

1

A Bayesian approach to joint modeling of protein-DNA binding, gene expression and sequence data.

Xie Y, Pan W, Jeong KS, Xiao G, Khodursky AB. Xie Y, et al. Stat Med. 2010 Feb 20;29(4):489-503. doi: 10.1002/sim.3815. Stat Med. 2010. PMID: 20049751 Free PMC article.

2

Genome-wide localization of mobile elements: experimental, statistical and biological considerations.

Martinez-Vaz BM, Xie Y, Pan W, Khodursky AB. Martinez-Vaz BM, et al. Among authors: xie y. BMC Genomics. 2005 Jun 1;6:81. doi: 10.1186/1471-2164-6-81. BMC Genomics. 2005. PMID: 15929794 Free PMC article.

3

A note on using permutation-based false discovery rate estimates to compare different analysis methods for microarray data.

Xie Y, Pan W, Khodursky AB. Xie Y, et al. Bioinformatics. 2005 Dec 1;21(23):4280-8. doi: 10.1093/bioinformatics/bti685. Epub 2005 Sep 27. Bioinformatics. 2005. PMID: 16188930

4

Incorporating prior information via shrinkage: a combined analysis of genome-wide location data and gene expression data.

Xie Y, Pan W, Jeong KS, Khodursky A. Xie Y, et al. Stat Med. 2007 May 10;26(10):2258-75. doi: 10.1002/sim.2703. Stat Med. 2007. PMID: 16958153

5

Analysis of pleiotropic transcriptional profiles: a case study of DNA gyrase inhibition.

Jeong KS, Xie Y, Hiasa H, Khodursky AB. Jeong KS, et al. Among authors: xie y. PLoS Genet. 2006 Sep 29;2(9):e152. doi: 10.1371/journal.pgen.0020152. Epub 2006 Aug 2. PLoS Genet. 2006. PMID: 17009874 Free PMC article.

6

Functional group-based linkage analysis of gene expression trait loci.

Li N, Wu B, Wei P, Xie B, Xie Y, Xiao G, Pan W. Li N, et al. Among authors: xie y, xie b. BMC Proc. 2007;1 Suppl 1(Suppl 1):S117. doi: 10.1186/1753-6561-1-s1-s117. Epub 2007 Dec 18. BMC Proc. 2007. PMID: 18466458 Free PMC article.

7

A case study on choosing normalization methods and test statistics for two-channel microarray data.

Xie Y, Jeong KS, Pan W, Khodursky A, Carlin BP. Xie Y, et al. Comp Funct Genomics. 2004;5(5):432-44. doi: 10.1002/cfg.416. Comp Funct Genomics. 2004. PMID: 18629172 Free PMC article.

8

The receptor interacting protein 1 inhibits p53 induction through NF-kappaB activation and confers a worse prognosis in glioblastoma.

Park S, Hatanpaa KJ, Xie Y, Mickey BE, Madden CJ, Raisanen JM, Ramnarain DB, Xiao G, Saha D, Boothman DA, Zhao D, Bachoo RM, Pieper RO, Habib AA. Park S, et al. Among authors: xie y. Cancer Res. 2009 Apr 1;69(7):2809-16. doi: 10.1158/0008-5472.CAN-08-4079. Cancer Res. 2009. PMID: 19339267 Free PMC article.

9

Nuclear receptor expression defines a set of prognostic biomarkers for lung cancer.

Jeong Y, Xie Y, Xiao G, Behrens C, Girard L, Wistuba II, Minna JD, Mangelsdorf DJ. Jeong Y, et al. Among authors: xie y. PLoS Med. 2010 Dec 14;7(12):e1000378. doi: 10.1371/journal.pmed.1000378. PLoS Med. 2010. PMID: 21179495 Free PMC article.

10

A novel approach to DNA copy number data segmentation.

Wang S, Wang Y, Xie Y, Xiao G. Wang S, et al. Among authors: xie y. J Bioinform Comput Biol. 2011 Feb;9(1):131-48. doi: 10.1142/s0219720011005343. J Bioinform Comput Biol. 2011. PMID: 21328710 Free PMC article.

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