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Towards a consensus on datasets and evaluation metrics for developing B-cell epitope prediction tools.
Greenbaum JA, Andersen PH, Blythe M, Bui HH, Cachau RE, Crowe J, Davies M, Kolaskar AS, Lund O, Morrison S, Mumey B, Ofran Y, Pellequer JL, Pinilla C, Ponomarenko JV, Raghava GP, van Regenmortel MH, Roggen EL, Sette A, Schlessinger A, Sollner J, Zand M, Peters B. Greenbaum JA, et al. J Mol Recognit. 2007 Mar-Apr;20(2):75-82. doi: 10.1002/jmr.815. J Mol Recognit. 2007. PMID: 17205610 Review.
Kinetic analysis of a complete poxvirus transcriptome reveals an immediate-early class of genes.
Assarsson E, Greenbaum JA, Sundström M, Schaffer L, Hammond JA, Pasquetto V, Oseroff C, Hendrickson RC, Lefkowitz EJ, Tscharke DC, Sidney J, Grey HM, Head SR, Peters B, Sette A. Assarsson E, et al. Among authors: greenbaum ja. Proc Natl Acad Sci U S A. 2008 Feb 12;105(6):2140-5. doi: 10.1073/pnas.0711573105. Epub 2008 Feb 1. Proc Natl Acad Sci U S A. 2008. PMID: 18245380 Free PMC article.
Immune epitope database analysis resource (IEDB-AR).
Zhang Q, Wang P, Kim Y, Haste-Andersen P, Beaver J, Bourne PE, Bui HH, Buus S, Frankild S, Greenbaum J, Lund O, Lundegaard C, Nielsen M, Ponomarenko J, Sette A, Zhu Z, Peters B. Zhang Q, et al. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W513-8. doi: 10.1093/nar/gkn254. Epub 2008 May 31. Nucleic Acids Res. 2008. PMID: 18515843 Free PMC article.
The immune epitope database 2.0.
Vita R, Zarebski L, Greenbaum JA, Emami H, Hoof I, Salimi N, Damle R, Sette A, Peters B. Vita R, et al. Among authors: greenbaum ja. Nucleic Acids Res. 2010 Jan;38(Database issue):D854-62. doi: 10.1093/nar/gkp1004. Epub 2009 Nov 11. Nucleic Acids Res. 2010. PMID: 19906713 Free PMC article.
A multivalent and cross-protective vaccine strategy against arenaviruses associated with human disease.
Kotturi MF, Botten J, Sidney J, Bui HH, Giancola L, Maybeno M, Babin J, Oseroff C, Pasquetto V, Greenbaum JA, Peters B, Ting J, Do D, Vang L, Alexander J, Grey H, Buchmeier MJ, Sette A. Kotturi MF, et al. Among authors: greenbaum ja. PLoS Pathog. 2009 Dec;5(12):e1000695. doi: 10.1371/journal.ppat.1000695. Epub 2009 Dec 18. PLoS Pathog. 2009. PMID: 20019801 Free PMC article.
89 results