Qiu Y - Search Results

1

The transcription unit architecture of the Escherichia coli genome.

Cho BK, Zengler K, Qiu Y, Park YS, Knight EM, Barrett CL, Gao Y, Palsson BØ. Cho BK, et al. Among authors: qiu y. Nat Biotechnol. 2009 Nov;27(11):1043-9. doi: 10.1038/nbt.1582. Epub 2009 Nov 1. Nat Biotechnol. 2009. PMID: 19881496 Free PMC article.

2

Genome-scale analysis of the uses of the Escherichia coli genome: model-driven analysis of heterogeneous data sets.

Allen TE, Herrgård MJ, Liu M, Qiu Y, Glasner JD, Blattner FR, Palsson BØ. Allen TE, et al. Among authors: qiu y. J Bacteriol. 2003 Nov;185(21):6392-9. doi: 10.1128/JB.185.21.6392-6399.2003. J Bacteriol. 2003. PMID: 14563874 Free PMC article.

3

Structural and operational complexity of the Geobacter sulfurreducens genome.

Qiu Y, Cho BK, Park YS, Lovley D, Palsson BØ, Zengler K. Qiu Y, et al. Genome Res. 2010 Sep;20(9):1304-11. doi: 10.1101/gr.107540.110. Epub 2010 Jun 30. Genome Res. 2010. PMID: 20592237 Free PMC article.

4

Comparative analysis of regulatory elements between Escherichia coli and Klebsiella pneumoniae by genome-wide transcription start site profiling.

Kim D, Hong JS, Qiu Y, Nagarajan H, Seo JH, Cho BK, Tsai SF, Palsson BØ. Kim D, et al. Among authors: qiu y. PLoS Genet. 2012;8(8):e1002867. doi: 10.1371/journal.pgen.1002867. Epub 2012 Aug 9. PLoS Genet. 2012. PMID: 22912590 Free PMC article.

5

Characterizing the interplay between multiple levels of organization within bacterial sigma factor regulatory networks.

Qiu Y, Nagarajan H, Embree M, Shieu W, Abate E, Juárez K, Cho BK, Elkins JG, Nevin KP, Barrett CL, Lovley DR, Palsson BO, Zengler K. Qiu Y, et al. Nat Commun. 2013;4:1755. doi: 10.1038/ncomms2743. Nat Commun. 2013. PMID: 23612296 Free article.

6

De Novo assembly of the complete genome of an enhanced electricity-producing variant of Geobacter sulfurreducens using only short reads.

Nagarajan H, Butler JE, Klimes A, Qiu Y, Zengler K, Ward J, Young ND, Methé BA, Palsson BØ, Lovley DR, Barrett CL. Nagarajan H, et al. Among authors: qiu y. PLoS One. 2010 Jun 8;5(6):e10922. doi: 10.1371/journal.pone.0010922. PLoS One. 2010. PMID: 20544019 Free PMC article.

7

A c-type cytochrome and a transcriptional regulator responsible for enhanced extracellular electron transfer in Geobacter sulfurreducens revealed by adaptive evolution.

Tremblay PL, Summers ZM, Glaven RH, Nevin KP, Zengler K, Barrett CL, Qiu Y, Palsson BO, Lovley DR. Tremblay PL, et al. Among authors: qiu y. Environ Microbiol. 2011 Jan;13(1):13-23. doi: 10.1111/j.1462-2920.2010.02302.x. Environ Microbiol. 2011. PMID: 20636372

8

The genome organization of Thermotoga maritima reflects its lifestyle.

Latif H, Lerman JA, Portnoy VA, Tarasova Y, Nagarajan H, Schrimpe-Rutledge AC, Smith RD, Adkins JN, Lee DH, Qiu Y, Zengler K. Latif H, et al. Among authors: qiu y. PLoS Genet. 2013 Apr;9(4):e1003485. doi: 10.1371/journal.pgen.1003485. Epub 2013 Apr 25. PLoS Genet. 2013. PMID: 23637642 Free PMC article.

9

The iron stimulon and fur regulon of Geobacter sulfurreducens and their role in energy metabolism.

Embree M, Qiu Y, Shieu W, Nagarajan H, O'Neil R, Lovley D, Zengler K. Embree M, et al. Among authors: qiu y. Appl Environ Microbiol. 2014 May;80(9):2918-27. doi: 10.1128/AEM.03916-13. Epub 2014 Feb 28. Appl Environ Microbiol. 2014. PMID: 24584254 Free PMC article.

10

Production of pilus-like filaments in Geobacter sulfurreducens in the absence of the type IV pilin protein PilA.

Klimes A, Franks AE, Glaven RH, Tran H, Barrett CL, Qiu Y, Zengler K, Lovley DR. Klimes A, et al. Among authors: qiu y. FEMS Microbiol Lett. 2010 Sep 1;310(1):62-8. doi: 10.1111/j.1574-6968.2010.02046.x. Epub 2010 Jun 23. FEMS Microbiol Lett. 2010. PMID: 20629752

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