Van de Peer Y - Search Results

1

Transcription regulatory networks in Caenorhabditis elegans inferred through reverse-engineering of gene expression profiles constitute biological hypotheses for metazoan development.

Vermeirssen V, Joshi A, Michoel T, Bonnet E, Casneuf T, Van de Peer Y. Vermeirssen V, et al. Among authors: van de peer y. Mol Biosyst. 2009 Dec;5(12):1817-30. doi: 10.1039/B908108a. Epub 2009 Jul 17. Mol Biosyst. 2009. PMID: 19763340

2

Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences.

Bonnet E, Wuyts J, Rouzé P, Van de Peer Y. Bonnet E, et al. Among authors: van de peer y. Bioinformatics. 2004 Nov 22;20(17):2911-7. doi: 10.1093/bioinformatics/bth374. Epub 2004 Jun 24. Bioinformatics. 2004. PMID: 15217813

3

Detection of 91 potential conserved plant microRNAs in Arabidopsis thaliana and Oryza sativa identifies important target genes.

Bonnet E, Wuyts J, Rouzé P, Van de Peer Y. Bonnet E, et al. Among authors: van de peer y. Proc Natl Acad Sci U S A. 2004 Aug 3;101(31):11511-6. doi: 10.1073/pnas.0404025101. Epub 2004 Jul 22. Proc Natl Acad Sci U S A. 2004. PMID: 15272084 Free PMC article.

4

Helicoidal transfer matrix model for inhomogeneous DNA melting.

Michoel T, Van de Peer Y. Michoel T, et al. Among authors: van de peer y. Phys Rev E Stat Nonlin Soft Matter Phys. 2006 Jan;73(1 Pt 1):011908. doi: 10.1103/PhysRevE.73.011908. Epub 2006 Jan 13. Phys Rev E Stat Nonlin Soft Matter Phys. 2006. PMID: 16486186 Free article.

5

The small RNA world of plants.

Bonnet E, Van de Peer Y, Rouzé P. Bonnet E, et al. Among authors: van de peer y. New Phytol. 2006;171(3):451-68. doi: 10.1111/j.1469-8137.2006.01806.x. New Phytol. 2006. PMID: 16866953 Free article. Review.

6

Identification of novel regulatory modules in dicotyledonous plants using expression data and comparative genomics.

Vandepoele K, Casneuf T, Van de Peer Y. Vandepoele K, et al. Among authors: van de peer y. Genome Biol. 2006;7(11):R103. doi: 10.1186/gb-2006-7-11-r103. Genome Biol. 2006. PMID: 17090307 Free PMC article.

7

Validating module network learning algorithms using simulated data.

Michoel T, Maere S, Bonnet E, Joshi A, Saeys Y, Van den Bulcke T, Van Leemput K, van Remortel P, Kuiper M, Marchal K, Van de Peer Y. Michoel T, et al. Among authors: van de peer y, van remortel p, van den bulcke t, van leemput k. BMC Bioinformatics. 2007 May 3;8 Suppl 2(Suppl 2):S5. doi: 10.1186/1471-2105-8-S2-S5. BMC Bioinformatics. 2007. PMID: 17493254 Free PMC article.

8

Analysis of a Gibbs sampler method for model-based clustering of gene expression data.

Joshi A, Van de Peer Y, Michoel T. Joshi A, et al. Among authors: van de peer y. Bioinformatics. 2008 Jan 15;24(2):176-83. doi: 10.1093/bioinformatics/btm562. Epub 2007 Nov 22. Bioinformatics. 2008. PMID: 18033794

9

Generic eukaryotic core promoter prediction using structural features of DNA.

Abeel T, Saeys Y, Bonnet E, Rouzé P, Van de Peer Y. Abeel T, et al. Among authors: van de peer y. Genome Res. 2008 Feb;18(2):310-23. doi: 10.1101/gr.6991408. Epub 2007 Dec 20. Genome Res. 2008. PMID: 18096745 Free PMC article.

10

Hydrogen peroxide-induced gene expression across kingdoms: a comparative analysis.

Vandenbroucke K, Robbens S, Vandepoele K, Inzé D, Van de Peer Y, Van Breusegem F. Vandenbroucke K, et al. Among authors: van de peer y, van breusegem f. Mol Biol Evol. 2008 Mar;25(3):507-16. doi: 10.1093/molbev/msm276. Epub 2008 Jan 10. Mol Biol Evol. 2008. PMID: 18187560

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