Nakai K - Search Results

1

Comparative genomic analyses of Streptococcus mutans provide insights into chromosomal shuffling and species-specific content.

Maruyama F, Kobata M, Kurokawa K, Nishida K, Sakurai A, Nakano K, Nomura R, Kawabata S, Ooshima T, Nakai K, Hattori M, Hamada S, Nakagawa I. Maruyama F, et al. Among authors: nakai k. BMC Genomics. 2009 Aug 5;10:358. doi: 10.1186/1471-2164-10-358. BMC Genomics. 2009. PMID: 19656368 Free PMC article.

2

Weak correlation between sequence conservation in promoter regions and in protein-coding regions of human-mouse orthologous gene pairs.

Chiba H, Yamashita R, Kinoshita K, Nakai K. Chiba H, et al. Among authors: nakai k. BMC Genomics. 2008 Apr 2;9:152. doi: 10.1186/1471-2164-9-152. BMC Genomics. 2008. PMID: 18384671 Free PMC article.

3

Pseudocounts for transcription factor binding sites.

Nishida K, Frith MC, Nakai K. Nishida K, et al. Among authors: nakai k. Nucleic Acids Res. 2009 Feb;37(3):939-44. doi: 10.1093/nar/gkn1019. Epub 2008 Dec 23. Nucleic Acids Res. 2009. PMID: 19106141 Free PMC article.

4

Effects of Alu elements on global nucleosome positioning in the human genome.

Tanaka Y, Yamashita R, Suzuki Y, Nakai K. Tanaka Y, et al. Among authors: nakai k. BMC Genomics. 2010 May 17;11:309. doi: 10.1186/1471-2164-11-309. BMC Genomics. 2010. PMID: 20478020 Free PMC article.

5

Two different classes of co-occurring motif pairs found by a novel visualization method in human promoter regions.

Murakami K, Imanishi T, Gojobori T, Nakai K. Murakami K, et al. Among authors: nakai k. BMC Genomics. 2008 Mar 1;9:112. doi: 10.1186/1471-2164-9-112. BMC Genomics. 2008. PMID: 18312685 Free PMC article.

6

Profiling ascidian promoters as the primordial type of vertebrate promoter.

Okamura K, Yamashita R, Takimoto N, Nishitsuji K, Suzuki Y, Kusakabe TG, Nakai K. Okamura K, et al. Among authors: nakai k. BMC Genomics. 2011 Nov 30;12 Suppl 3(Suppl 3):S7. doi: 10.1186/1471-2164-12-S3-S7. Epub 2011 Nov 30. BMC Genomics. 2011. PMID: 22369359 Free PMC article.

7

Stable feature selection based on the ensemble L ₁ -norm support vector machine for biomarker discovery.

Moon M, Nakai K. Moon M, et al. Among authors: nakai k. BMC Genomics. 2016 Dec 22;17(Suppl 13):1026. doi: 10.1186/s12864-016-3320-z. BMC Genomics. 2016. PMID: 28155664 Free PMC article.

8

Analyzing the 3D chromatin organization coordinating with gene expression regulation in B-cell lymphoma.

Nagai LAE, Park SJ, Nakai K. Nagai LAE, et al. Among authors: nakai k. BMC Med Genomics. 2019 Mar 20;11(Suppl 7):127. doi: 10.1186/s12920-018-0437-8. BMC Med Genomics. 2019. PMID: 30894186 Free PMC article.

9

A regression analysis of gene expression in ES cells reveals two gene classes that are significantly different in epigenetic patterns.

Park SJ, Nakai K. Park SJ, et al. Among authors: nakai k. BMC Bioinformatics. 2011 Feb 15;12 Suppl 1(Suppl 1):S50. doi: 10.1186/1471-2105-12-S1-S50. BMC Bioinformatics. 2011. PMID: 21342583 Free PMC article.

10

Assessing the utility of gene co-expression stability in combination with correlation in the analysis of protein-protein interaction networks.

Patil A, Nakai K, Kinoshita K. Patil A, et al. Among authors: nakai k. BMC Genomics. 2011 Nov 30;12 Suppl 3(Suppl 3):S19. doi: 10.1186/1471-2164-12-S3-S19. Epub 2011 Nov 30. BMC Genomics. 2011. PMID: 22369639 Free PMC article.

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